Carlos A C Bastos

Position	Aux. professor
Affiliation	DETI / University of Aveiro
Group	Information Systems and Processing
Status	Researcher with PhD
Country	Portugal
Students
Former PhD students	Daniel Albuquerque
Former masters students	Show list
Courses	Conceitos de Sinais e Sistemas, Métodos Probabilísticos em Engenharia Informática
Projects	APH-ALARM, Augmented Humanity
Past projects	DNA symmetry, DNA-Profiles, Heron II, NeuroPath, Pervasive Tourism, SOCA - Smart Open Campus, Wind and Biodiversity
Events	ICASSP 2011
Proposals	BolsaWindAndBiodiversity
ORCID	0000-0001-6869-4713
Personal page

Publications

Articles in international journals listed in the ISI

• Carlos A C Bastos, Vera Afreixo, João M. O. S. Rodrigues, Armando J. Pinho, Raquel Silva. Distribution of Distances Between Symmetric Words in the Human Genome: Analysis of Regular Peaks. Interdisciplinary Sciences: Computational Life Sciences, vol. 11, no. 3, p. 367--372, September 2019 [IF 2018: 1.418 (Q3, 40/59)]
• Ana H. M. P. Tavares, Jakob Raymaekers, Peter J. Rousseeuw, Raquel Silva, Carlos A C Bastos, Armando J. Pinho, Paula Brito, Vera Afreixo. Comparing reverse complementary genomic words based on their distance distributions and frequencies. Interdisciplinary Sciences: Computational Life Sciences, vol. 10, no. 1, p. 1-11, March 2018 [IF 2018: 1.418 (Q3, 40/59)]
• Ana H. M. P. Tavares, Armando J. Pinho, Raquel Silva, João M. O. S. Rodrigues, Carlos A C Bastos, Paulo J S G Ferreira, Vera Afreixo. DNA word analysis based on the distribution of the distances between symmetric words. Scientific Reports, vol. 7, no. 728, April 2017 [IF 2018: 4.011 (Q1, 15/69)]
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Ana H.M.P. Tavares, Raquel Silva. Exceptional symmetry by genomic word. Interdisciplinary Sciences: Computational Life Sciences, vol. 9, no. 1, p. 14-23, March 2017 [IF 2017: 0.796 (Q4, 54/59)] [IF 2018: 1.418 (Q3, 40/59)]
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Raquel Silva. The exceptional genomic word symmetry along DNA sequences. BMC Bioinformatics, vol. 17, no. 59, p. 1-10, February 2016 [IF 2016: 2.448 (Q1, 10/57)]
• Daniel Albuquerque, José M. N. Vieira, Sérgio Lopes, Carlos A C Bastos, Paulo J S G Ferreira. Indoor acoustic simulator for ultrasonic broadband signals with Doppler effect. Applied Acoustics, vol. 97, p. 140-151, October 2015 [IF 2015: 1.462 (Q2, 13/32)]
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Analysis of single-strand exceptional word symmetry in the human genome: new measures. Biostatistics, vol. 16, no. 2, p. 209-221, April 2015 [IF 2015: 2.109 (Q1, 13/123)]
• Ricardo Correia, Carlos Faneca, Daniel Albuquerque, José M. N. Vieira, Carlos A C Bastos, Carlos Fonseca, Maria João Ramos Pereira. Low-cost acoustic design of a bat test room. Bioacoustics: The International Journal of Animal Sound and its Recording, vol. 24, no. 1, p. 81-82, January 2015
• Vera Afreixo, Carlos A C Bastos, Sara Pinto Garcia, João M. O. S. Rodrigues, Armando J. Pinho, Paulo J S G Ferreira. The breakdown of word symmetry in the human genome. Journal of Theoretical Biology, vol. 335, p. 153-159, October 2013 [IF 2013: 2.303 (Q1, 10/52)]
• Sara Pinto Garcia, João M. O. S. Rodrigues, Sérgio Santos, Diogo Pratas, Vera Afreixo, Carlos A C Bastos, Paulo J S G Ferreira, Armando J. Pinho. A genomic distance for assembly comparison based on compressed maximal exact matches. IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 3, p. 793-798, May 2013 [IF 2013: 1.536 (Q1, 24/119)]
• Armando J. Pinho, Paulo J S G Ferreira, António J. R. Neves, Carlos A C Bastos. On the representability of complete genomes by multiple competing finite-context (Markov) models. PLoS ONE, vol. 6, no. 6, p. e21588, June 2011 [IF 2011: 4.092 (Q1, 12/85)] [IF 2018: 2.776 (Q2, 24/69)]
• Vera Afreixo, Carlos A C Bastos, Armando J. Pinho, Sara Pinto Garcia, Paulo J S G Ferreira. Genome analysis with distance to the nearest dissimilar nucleotide. Journal of Theoretical Biology, vol. 275, no. 1, p. 52-58, April 2011 [IF 2011: 2.208 (Q1, 11/47)]
• Sara Pinto Garcia, Armando J. Pinho, João M. O. S. Rodrigues, Carlos A C Bastos, Paulo J S G Ferreira. Minimal absent words in prokaryotic and eukaryotic genomes. PLoS ONE, vol. 6, no. 1, p. e16065, January 2011 [IF 2011: 4.092 (Q1, 12/85)] [IF 2018: 2.776 (Q2, 24/69)]
• Vera Afreixo, Carlos A C Bastos, Armando J. Pinho, Sara Pinto Garcia, Paulo J S G Ferreira. Genome analysis with inter-nucleotide distances. Bioinformatics, vol. 25, no. 23, p. 3064-3070, December 2009 [IF 2009: 4.926 (Q1, 2/29)] [IF 2018: 4.531 (Q1, 4/59)]
• Armando J. Pinho, António J. R. Neves, Vera Afreixo, Carlos A C Bastos, Paulo J S G Ferreira. A three-state model for DNA protein-coding regions. IEEE Transactions on Biomedical Engineering, vol. 53, no. 11, p. 2148-2155, November 2006 [IF 2006: 2.302]
• Y. Zhang, J. C. Cardoso, Y. Y. Wang, P. J. Fish, Carlos A C Bastos. Time-scale removal of "Wall thump" in Doppler ultrasound signals: A simulation study. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 51, no. 9, p. 1187-1192, September 2004

Other articles in journals

• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Exceptional single strand DNA word symmetry: analysis of evolutionary potentialities. Journal of Integrative Bioinformatics, vol. 11, no. 3, p. 250, October 2014
• Carlos A C Bastos, Vera Afreixo, Sara Pinto Garcia, Armando J. Pinho. Inter-STOP symbol distances for the identification of coding regions. Journal of Integrative Bioinformatics, vol. 10, no. 3, p. 230, November 2013
• Carlos A C Bastos, Vera Afreixo, Armando J. Pinho, Sara Pinto Garcia, João M. O. S. Rodrigues, Paulo J S G Ferreira. Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions. Journal of Integrative Bioinformatics, vol. 8, no. 3, September 2011
• Daniel Albuquerque, José M. N. Vieira, Carlos A C Bastos. Room Acoustics Simulator for Ultrasonic Robot Location. Robótica, vol. 4, no. 77, p. 10-14, October 2009
• Daniel Albuquerque, José M. N. Vieira, Carlos A C Bastos. Sistema de Localização com Ultra-sons. Electrónica e Telecomunicações, vol. 4, no. 9, p. 1059 - 1063, September 2008

Chapters in books

• António J. S. Teixeira, Francisco Vaz, Carlos A C Bastos. Física del sonido aplicada a la audición. Audiología, Manuel Manrique, Jaime Marco (Ed.), SEORL, 2014
• João Freitas, António J. S. Teixeira, Miguel Sales Dias, Carlos A C Bastos. Towards a Multimodal Silent Speech Interface for European Portuguese. Speech Technologies, INTECH, vol. Book 1, 2011
• Armando J. Pinho, António J. R. Neves, Daniel A. Martins, Carlos A C Bastos, Paulo J S G Ferreira. Finite-context models for DNA coding. Signal Processing, Sebastian Miron (Ed.), INTECH, p. 117-130, March 2010

Articles in conference proceedings

• Carlos A C Bastos, Vera Afreixo, João M. O. S. Rodrigues, Armando J. Pinho. Detection and Characterization of Local Inverted Repeats Regularities. Practical Applications of Computational Biology and Bioinformatics, 13th International Conference (PACBB 2019), Ávila, Spain, vol. Advances in Intelligent Systems and Computing, 1005, June 2019
• Carlos A C Bastos, Vera Afreixo, João M. O. S. Rodrigues, Armando J. Pinho. An analysis of symmetric words in human DNA: adjacent vs non-adjacent word distances. PACBB 2018 - 12th International Conference on Practical Applications of Computational Biology & Bioinformatics, Toledo, Spain, June 2018
• Ana H. M. P. Tavares, Jakob Raymaekers, Peter J. Rousseeuw, Raquel Silva, Carlos A C Bastos, Armando J. Pinho, Paula Brito, Vera Afreixo. Dissimilar symmetric word pairs in the human genome. PACBB 2017 - 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, Portugal, vol. AISC 616, p. 248-256, June 2017
• Ana H.M.P. Tavares, João M. O. S. Rodrigues, Carlos A C Bastos, Armando J. Pinho, Paulo J S G Ferreira, Paula Brito, Vera Afreixo. Detection of exceptional genomic words: a comparison between species. Proceedings of COMPSTAT 2016 (22nd International Conference on Computational Statistics), Oviedo, Spain, p. 255--266, August 2016
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Raquel Silva. Exceptional symmetry profile: a genomic word analysis. International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB), Sevilla, Spain, vol. 477 (in Springer series Advances in Intelligent Systems and Computing), p. 151--159, June 2016
• Vera Afreixo, Carlos A C Bastos, João M. O. S. Rodrigues, Raquel Silva. Identification of DNA CpG Islands Using Inter-dinucleotide Distances. Optimization in the Natural Sciences. 30th Euro Mini-Conference, EmC-ONS 2014. Aveiro, Portugal, February 5–9, 2014. Revised Selected Papers. (Series: Communications in Computer and Information Science), Springer International Publishing, Switzerland, vol. 499, p. 162-172, 2015
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Exploring the exceptional genomic word symmetry among regions (Poster). 2015 annual workshop on Statistical Methods for Post Genomic Data (SMPGD), Munich, Germany, February 2015
• Ana Helena Tavares, Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. The Symmetry of Oligonucleotide Distance Distributions in the Human Genome. ICPRAM 2015 - 4th International Conference on Pattern Recognition Applications and Methods, Lisbon, vol. 2, p. 256-263, January 2015
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Exceptional Single Strand DNA Word Symmetry: Universal Law?. 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014), Salamanca, Spain, vol. Advances in Inteligent Systems and Computing 294, p. 137-143, June 2014
• Vera Afreixo, João Antunes, Carlos A C Bastos. Identification of DNA CpG islands using inter-dinucleotide distances. EURO Mini conference on Optimization in Natural Sciences 2014, Aveiro, Portugal, vol. (Abstract), February 2014
• Vera Afreixo, Carlos A C Bastos. Testando, estatisticamente, a segunda lei de Chargaff. Livro de atas do XX Congresso Anual da Sociedade Portuguesa de Estatística, p. 15, 2013
• Carlos A C Bastos, Vera Afreixo, Sara Pinto Garcia, Armando J. Pinho. Segmentation of DNA into coding and Noncoding region based on inter-STOP symbols distances. Advances in Intelligent Systems and Computing, Proc. of the 7th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics, PACBB 2013, Salamanca, Spain, vol. 222, p. 23-28, May 2013
• Daniel Albuquerque, José M. N. Vieira, Sérgio Lopes, Carlos A C Bastos, Paulo J S G Ferreira. Indoor Ultrasonic Simulator for Moving Objects Using Fractional Delay Filters. International Conference on Indoor Positioning and Indoor Navigation, Guimarães, Portugal, September 2011
• Daniel Albuquerque, José M. N. Vieira, Sérgio Lopes, Carlos A C Bastos, Paulo J S G Ferreira. Indoor Ultrasonic Transfer Function for Moving Objects. International Conference on Indoor Positioning and Indoor Navigation, Guimarães, Portugal, September 2011
• Paulo J S G Ferreira, Armando J. Pinho, Carlos A C Bastos. A probabilistic image analysis problem and random linear equations. Proc. of the IEEE Workshop on Statistical Signal Processing, SSP 2011, Nice, France, p. 325-328, June 2011
• Diogo Pratas, Carlos A C Bastos, Armando J. Pinho, António J. R. Neves, Luís Matos. DNA synthetic sequences generation using multiple competing Markov models. Proc. of the IEEE Workshop on Statistical Signal Processing, SSP 2011, Nice, France, p. 133-136, June 2011
• Carlos A C Bastos, Vera Afreixo, Armando J. Pinho, Sara Pinto Garcia, João M. O. S. Rodrigues, Paulo J S G Ferreira. Distances between dinucleotides in the human genome. Advances in Intelligent and Soft Computing, Proc. of the 5th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, Salamanca, Spain, vol. 93, p. 205-211, April 2011
• Daniel Albuquerque, José M. N. Vieira, Carlos A C Bastos, Paulo J S G Ferreira. Ultrasonic OFDM Pulse Detection for Time of Flight Measurement Over White Gaussian Noise Channel. 1st Int. Conf. on Pervasive and Embedded Computing and Communication Systems, Vilamoura, Portugal, March 2011
• Daniel Albuquerque, José M. N. Vieira, Carlos A C Bastos, Paulo J S G Ferreira. Ultrasonic OFDM Pulse for Beacon Identification and Distance Measurement in Reverberant Environments. 1st Int. Conf. on Pervasive and Embedded Computing and Communication Systems, Vilamoura, Portugal, March 2011
• Diogo Pratas, Armando J. Pinho, António J. R. Neves, Carlos A C Bastos. DNA synthetic sequences generated by finite-context models. Proc. of the 16th Portuguese Conf. on Pattern Recognition, RecPad 2010, Vila Real, Portugal, October 2010
• ...further results

PhD thesis

• Carlos A C Bastos. A Model for the Simulation of Doppler Ultrasound Signals from Pulsatile Blood Flow. PhD Thesis, Universidade de Aveiro, December 1999

Projects