Carlos Costa

Position	Aux. professor
Affiliation	DETI / University of Aveiro
Group	Biomedical Informatics and Technologies
Status	Researcher with PhD
Country	Portugal
Students	Micael Pedrosa, Rui Lebre
Former PhD students	Luís Bastião Silva, Eriksson Monteiro, Tiago Godinho, Luis Ribeiro, Carlos Viana Ferreira
Former masters students	Show list
Courses	Base de Dados, Complementos de Bases de Dados, Medical Imaging Networks and Systems, Padrões e Desenho de Software, Programacao3, Programação 2
Projects
Past projects	AQUAWEB, Cloud Thinking, DICOM P2P, EMIF, EU-ADR, GEN2PHEN, IBERO-NBIC, MMIR, RD-Connect, SCREEN-DR, Smartphones for Smart Seniors
Events	CMS 2014
Proposals
ORCID	0000-0002-2707-5331
Personal page	http://www.ieeta.pt/~costa

Publications

Articles in international journals listed in the ISI

• Jorge Miguel Silva, Eduardo Pinho, Eriksson Monteiro, João Figueira Silva, Carlos Costa. Controlled searching in reversibly de-identified medical imaging archives. Journal of Biomedical Informatics, vol. 77, p. 81 - 90, January 2018 [IF 2017: 2.882 (Q2, 28/105)]
• Carlos Viana Ferreira, António Guerra, João Figueira Silva, Sérgio Matos, Carlos Costa. An Intelligent Cloud Storage Gateway for Medical Imaging. Journal of Medical Systems, vol. 41, no. 9, p. 141, September 2017 [IF 2017: 2.098 (Q2, 46/94)]
• Tiago Godinho, Rui Lebre, Luís Bastião Silva, Carlos Costa. An efficient architecture to support digital pathology in standard medical imaging repositories. Journal of Biomedical Informatics, vol. 71, p. 190-197, July 2017 [IF 2017: 2.882 (Q2, 28/105)]
• Tiago Godinho, Carlos Costa, José Luís Oliveira. Intelligent Generator of Big Data Medical Imaging Repositories. IET Software, vol. 11, no. 3, p. 100, February 2017
• Frederico Valente, Luís Bastião Silva, Tiago Godinho, Carlos Costa. Anatomy of an Extensible Open Source PACS. Journal of Digital Imaging, vol. 29, no. 3, p. 284-296, June 2016 [IF 2016: 1.407 (Q3, 88/127)] [IF 2017: 1.536 (Q3, 87/129)]
• Eriksson Monteiro, Carlos Costa, José Luís Oliveira. A Cloud Architecture for Teleradiology-as-a-Service. Methods of Information in Medicine, vol. 55, no. 3, p. 203-214, March 2016 [IF 2016: 1.772, 1.772 (Q3, Q3, 78/146, 78/146)]
• Carlos Viana Ferreira, Luis Ribeiro, Sérgio Matos, Carlos Costa. Pattern Recognition for Cache Management in Distributed Medical Imaging Environments. International Journal of Computer Assisted Radiology and Surgery, vol. 11, no. 2, p. 327-336, February 2016 [IF 2016: 1.863 (Q2, 97/197)]
• Tiago Godinho, Carlos Viana Ferreira, Luís Bastião Silva, Carlos Costa. A Routing Mechanism for Cloud Outsourcing of Medical Imaging Repositories. IEEE Journal of Biomedical and Health Informatics, vol. 20, no. 1, p. 367-375, January 2016 [IF 2016: 3.451 (Q1, 20/146)]
• Luís Bastião Silva, Luís Ribeiro, Milton Santos, Nuno Neves, Dulce Francisco, Carlos Costa, José Luís Oliveira. Normalizing Heterogeneous Medical Imaging Data to Measure the Impact of Radiation Dose. Journal of Digital Imaging, vol. 28, no. 6, p. 671-683, May 2015 [IF 2015: 1.406 (Q3, 91/124)] [IF 2017: 1.536 (Q3, 87/129)]
• Maria Feio, Carlos Viana Ferreira, Carlos Costa. Testing a multiple machine learning tool (HYDRA) for the bioassessment of fresh waters. Freshwater Science, vol. 33, no. 4, p. 1286-1296, December 2014 [IF 2014: 1.941 (Q2, 33/103)]
• Maria João Feio, Carlos Viana Ferreira, Carlos Costa. Combining multiple machine learning algorithms to predict taxa under reference conditions for streams bioassessment. River Research and Applications, vol. 30, no. 9, p. 1157-1165, November 2014 [IF 2014: 2.025 (Q2, 21/83)]
• Luís Bastião Silva, Samuel Campos, Carlos Costa, José Luís Oliveira. Sensor-Based Architecture for Medical Imaging Workflow Analysis. Journal of Medical Systems, vol. 38, p. 1-11, August 2014 [IF 2014: 2.213 (Q2, 7/24)] [IF 2017: 2.098 (Q2, 46/94)]
• Luis Ribeiro, Carlos Viana Ferreira, José Luís Oliveira, Carlos Costa. XDS-I outsourcing proxy: ensuring confidentiality while preserving interoperability. IEEE Journal of Biomedical and Health Informatics, vol. 18, no. 4, p. 1404-1412, July 2014 [IF 2014: 1.440 (Q2, 47/139)]
• Luís Bastião Silva, Renato Pinho, Luis Ribeiro, Carlos Costa, José Luís Oliveira. A Centralized Platform for Geo-Distributed PACS Management. Journal of Digital Imaging, vol. 27, no. 2, p. 165-173, April 2014 [IF 2014: 1.190 (Q4, 95/125)] [IF 2017: 1.536 (Q3, 87/129)]
• Frederico Valente, Augusto Silva, Carlos Costa. Content-based Image Retrieval for Clinical Applications: An Overview of Current Approaches and Challenges. Current Medical Imaging Reviews, vol. 9, no. 4, p. 250-262, December 2013 [IF 2013: 1.059, 1.059 (Q4, 94/122), 0.730, 0.730 (Q4, 112/125)]
• Luís Bastião Silva, Carlos Costa, José Luís Oliveira. A common API for delivering services over multi-vendor cloud resources. Journal of Systems and Software, vol. 86, no. 9, p. 2309–2317, September 2013 [IF 2013: 1.245 (Q2, 29/102)]
• Luís Bastião Silva, Carlos Costa, José Luís Oliveira. DICOM Relay over the Cloud. International Journal of Computer Assisted Radiology and Surgery, vol. 8, no. 3, p. 323-333, May 2013 [IF 2013: 1.659 (Q2, 84/204)]
• Frederico Valente, Carlos Costa, Augusto Silva. Dicoogle, a Pacs Featuring Profiled Content Based Image Retrieval. PLoS ONE, vol. 8, no. 5, May 2013 [IF 2013: 3.534 (Q1, 8/55)] [IF 2017: 2.766 (Q1, 15/64)]
• Luis Ribeiro, Carlos Costa, José Luís Oliveira. Clustering of distinct PACS archives using a cooperative peer-to-peer network. Computer Methods and Programs in Biomedicine, vol. 108, no. 3, p. 1002-1011, December 2012 [IF 2012: 1.555] [IF 2017: 2.674 (Q1, 19/103)]
• Carlos Costa, José Luís Oliveira. Telecardiology through ubiquitous Internet services. International Journal of Medical Informatics, vol. 81, no. 9, p. 612-621, September 2012 [IF 2012: 2.061] [IF 2017: 2.957 (Q1, 35/148)]
• ...further results

Other articles in journals

• Jorge Miguel Silva, Tiago Godinho, David Silva, Carlos Costa. A community-driven validation service for standard medical imaging objects. Computer Standards & Interfaces, vol. 61, p. 121 - 128, January 2019
• Micael Pedrosa, Jorge Miguel Silva, João Figueira Silva, Sérgio Matos, Carlos Costa. SCREEN-DR: Collaborative platform for diabetic retinopathy. International Journal of Medical Informatics, January 2019 [IF 2017: 2.957 (Q1, 35/148)]
• Eduardo Pinho, Carlos Costa. Automated Anatomic Labeling Architecture for Content Discovery in Medical Imaging Repositories. Journal of Medical Systems, vol. 42, no. 145, August 2018 [IF 2017: 2.098 (Q2, 46/94)]
• Eduardo Pinho, Carlos Costa. Unsupervised Learning for Concept Detection in Medical Images: A Comparative Analysis. Applied Sciences, vol. 8, no. 1213, July 2018
• Eduardo Pinho, Tiago Godinho, Frederico Valente, Carlos Costa. A Multimodal Search Engine for Medical Imaging Studies. Journal of Digital Imaging, vol. 30, no. 1, p. 39-48, February 2017 [IF 2017: 1.536 (Q3, 87/129)]
• Frederico Valente, Augusto Silva, Carlos Costa, C.Suárez-Ortega. Performance analysis of machine learning algorithms for automated diagnosis using a dataflow-based approach on the grid. International Journal of Image Mining, vol. 1, no. 2-3, p. 261–278, November 2015
• Carlos Viana Ferreira, Sérgio Matos, Carlos Costa. Long-term prefetching for cloud medical imaging repositories. Studies in Health Technology and Informatics, vol. 210, p. 1028-1030, May 2015

Chapters in books

• Milton Santos, Luis Bastião, Carlos Costa, Augusto Silva, Nelson Rocha. Clinical Data Mining in Small Hospital PACS: Contributions for Radiology Department Inprovement. Healthcare Administration: Concepts, Methodologies, Tools, and Applications, IGI Global, p. 47-66, January 2015
• Carlos Viana Ferreira, Carlos Costa. Challenges of Using Cloud Computing in Medical Imaging. Advances in Cloud Computing Research, Muthu Ramachandran (Ed.), Nova Publishers, April 2014
• Luís Bastião Silva, Carlos Costa, José Luís Oliveira. Regional PACS over the Cloud.. Líneas estratégicas de las Tecnologías de la Información y las Comunicaciones en Salud, CYTED, p. 21-32, 2013
• Milton Santos, Luís Bastião Silva, Carlos Costa, Augusto Silva, Nelson Rocha. Clinical Data Mining in Small Hospital PACS: Contributions for Radiology Department Improvement. Information Systems and Technologies for Enhancing Health and Social Care, IGI Global, vol. chapter 16, p. p236-251, March 2013
• Frederico Valente, Carlos Costa, Augusto Silva. Content Based Retrieval Systems in a Clinical Context. Medical Imaging in Clinical Practice, Okechukwu Felix Erondu (Ed.), INTECH, p. 3 - 20, February 2013
• Luis Ribeiro, Carlos Costa, José Luís Oliveira. Current Trends in Archiving and Transmission of Medical Images. Medical Imaging, Okechukwu Felix Erondu (Ed.), InTech, p. 89-106, December 2011
• Milton Santos, Luís Bastião Silva, Carlos Costa, Augusto Silva, Nelson Rocha. DICOM and Clinical Data Mining in a Small Hospital PACS: A Pilot Study. ENTERPRISE INFORMATION SYSTEMS - Centeris 2011, Maria Manuela Cruz-Cunha, João Varajão, Philip Powell and Ricardo Martinho (Ed.), Springer, vol. 221, p. 254-261, October 2011
• Carlos Costa, Augusto Silva, José Luís Oliveira. Current Perspectives on PACS and a Cardiology Case Study. Advanced Computational Intelligence Paradigms in Healthcare-2, S. Vaidya, L. C. Jain, H. Yoshida (Ed.), Springer-Verlag, vol. 65, p. 79-108, 2007

Articles in conference proceedings

• Micael Pedrosa, André Zúquete, Carlos Costa. Pseudonymisation with break-the-glass compatibility for health records in federated services. Proceedings of the 19th IEEE International Conference on BioInformatics and BioEngineering (IEEE BIBE 2019), Athens, Greece, October 2019
• Micael Pedrosa, Jorge Miguel Silva, Sérgio Matos, Carlos Costa. SCREEN-DR - Software Architecture for the Diabetic Retinopathy Screening. Studies in health technology and informatics, vol. 247, p. 396-400, 2018
• Eduardo Pinho, Carlos Costa. Feature Learning with Adversarial Networks for Concept Detection in Medical Images: UA.PT Bioinformatics at ImageCLEF 2018. Working notes of CLEF 2018 - Conference and Labs of the Evaluation Forum, Avignon, France, September 2018
• Jorge Miguel Silva, António Guerra, João Figueira Silva, Carlos Costa, Sérgio Matos. A Novel 3D-CNN Approach For Ejection Fraction Classification in Transthoracic Echocardiography. International Journal of Computer Assisted Radiology and Surgery, Berlin, Germany, vol. 13 (Supp1), p. S131--S132, June 2018
• João Figueira Silva, Jorge Miguel Silva, António Guerra, Sérgio Matos, Carlos Costa. Ejection Fraction Classification in Transthoracic Echocardiography Using a Deep Learning Approach. 2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, Sweden, p. 123-128, June 2018
• Jorge Miguel Silva, António Guerra, João Figueira Silva, Eduardo Pinho, Carlos Costa. Face De-Identification Service for Neuroimaging Volumes. 2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, Sweden, p. 141-145, June 2018
• Carlos Costa, Micael Pedrosa, Jorge Miguel Silva, Sérgio Matos. Research PACS for diabetic retinopathy screening. International Journal of Computer Assisted Radiology and Surgery, Berlin, Germany, vol. 13 (Supp1), p. S32--S33, June 2018
• João Almeida, Tiago Godinho, Luís Bastião Silva, Carlos Costa, José Luís Oliveira. Services Orchestration and Workflow Management in Distributed Medical Imaging Environments. 2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS), Karlstad, Sweden, p. 170-175, June 2018
• Micael Pedrosa, Jorge Miguel Silva, Carlos Costa. Reactive Through Services-Opinionated Framework for Developing Reactive Services. 8th International Conference on Cloud Computing and Services Science (CLOSER), p. 330-337, January 2018
• Jorge Miguel Silva, Tiago Godinho, David Silva, Carlos Costa. Web Validation Service for Ensuring Adherence to the DICOM Standard. Studies in Health Technology and Informatics. Informatics for Health: Connected Citizen-Led Wellness and Population Health, vol. 235, p. 38-42, 2017
• João Figueira Silva, Jorge Miguel Silva, Eduardo Pinho, Carlos Costa. 3D-CNN in drug resistance detection and tuberculosis classification. CLEF2017 Working Notes., CEUR Workshop Proceedings, Dublin, Ireland, CEUR-WS., September 2017
• Eduardo Pinho, João Figueira Silva, Jorge Miguel Silva, Carlos Costa. Towards representation learning for biomedical concept detection in medical images: UA.PT bioinformatics in ImageCLEF 2017. CLEF2017 Working Notes, CEUR Workshop Proceedings, Dublin, Ireland, CEUR-WS, September 2017
• Eriksson Monteiro, Carlos Costa, José Luís Oliveira. Using Deep Machine Learning for Medical Image De-identification. RecPad 2016, October 2016
• André P. Alves, Tiago Godinho, Carlos Costa. Assessing the relational database model for optimization of content discovery services in medical imaging repositories. 2016 IEEE 18th International Conference on e-Health Networking, Applications and Services (Healthcom), Munich, Germany, September 2016
• Tiago Godinho, Luís Bastião Silva, Carlos Costa. Integrating Multiple Data Sources in a Cardiology Imaging Laboratory. 18th International Conference on E-health Networking, Application & Services (HealthCom 2016), September 2016
• Pedro Matos, Luís Bastião Silva, Tiago Godinho, Carlos Costa. A dynamic approach to support interoperability for medical reports using DICOM SR. Medical Informatics Europe 2016 (MIE2016/HEC2016), August 2016
• Miguel Valério, Tiago Godinho, Carlos Costa. User oriented platform for data analytics in medical imaging repositories. Medical Informatics Europe 2016 (MIE2016/HEC2016), August 2016
• Eduardo Pinho, Frederico Valente, Carlos Costa. A PACS-oriented Multimodal Search Engine. 30th Computer Assisted Radiology and Surgery (CARS 2016), June 2016
• Eriksson Monteiro, Carlos Costa, José Luís Oliveira. Caching and Prefetching Images in a Web-based DICOM Viewer. 29th International Symposium on Computer-Based Medical Systems (CBMS 2016), June 2016
• Tiago Godinho, Carlos Costa, José Luís Oliveira. Generating Big Data Repositories for Research in Medical Imaging. n 11th Iberian Conference on Information Systems and Technologies (CISTI2016), June 2016
• ...further results

PhD thesis

• Carlos Costa. Concepção, desenvolvimento e avaliação de um modelo integrado de acesso a registos clínicos electrónicos. PhD Thesis, Universidade de Aveiro, November 2004