Diogo Pratas
From IEETA
| Subject | DNA sequence compression and analysis |  |
|---|---|---|
| Advisor | Armando J. Pinho | |
| Group | Signal Processing Laboratory | |
| Transverse activity | Transverse Activity on Innovative Biomedical Technologies | |
| Status | PhD student | |
| Starts | 2011/10/01 | |
| Ends | 2015/09/30 | |
| Country | Portugal | |
| Projects | DNA-Profiles, FCM-DNA | |
| Events | ||
| Proposals | ||
| Personal page |
Publications
Articles in international journals listed in the ISI
- Armando J. Pinho, Diogo Pratas, Sara Pinto Garcia. GReEn: a tool for efficient compression of genome resequencing data. Nucleic Acids Research, December 2011 (IF 2010: 7.836)
Articles in proceedings of conferences
- Diogo Pratas, Armando J. Pinho, Sara Pinto Garcia. Computation of the normalized compression distance of DNA sequences using a mixture of finite-context models. Bioinformatics 2012: International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Portugal, February 2012
- Armando J. Pinho, Diogo Pratas, Sara Pinto Garcia. Complexity Profiles of DNA Sequences Using Finite-Context Models. Information Quality in e-Health: 7th Conference of the Workgroup Human-Computer Interaction and Usability Engineering of the Austrian Computer Society, USAB 2011, Graz, Austria, vol. LNCS 7058, p. 75-82, November 2011
- Diogo Pratas, Sara Pinto Garcia, Armando J. Pinho. Analysis of patterns in S. pombe genome through compression-based complexity profiles. Proc. of the 17th Portuguese Conf. on Pattern Recognition, RecPad 2011, Porto, Portugal, October 2011
- Armando J. Pinho, Diogo Pratas, Paulo J S G Ferreira, Sara Pinto Garcia. Symbolic to numerical conversion of DNA sequences using finite-context models. Proc. of the European Signal Processing Conference, EUSIPCO 2011, Barcelona, Spain, p. 2024-2028, August 2011
- Armando J. Pinho, Diogo Pratas, Paulo J S G Ferreira. Bacteria DNA sequence compression using a mixture of finite-context models. Proc. of the IEEE Workshop on Statistical Signal Processing, SSP 2011, Nice, France, p. 125-128, June 2011
- Diogo Pratas, Carlos A C Bastos, Armando J. Pinho, António J. R. Neves, Luís Matos. DNA synthetic sequences generation using multiple competing Markov models. Proc. of the IEEE Workshop on Statistical Signal Processing, SSP 2011, Nice, France, p. 133-136, June 2011
- Diogo Pratas, Armando J. Pinho. Compressing the human genome using exclusively Markov models. Advances in Intelligent and Soft Computing, Proc. of the 5th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, Salamanca, Spain, vol. 93, p. 213-220, April 2011
- Diogo Pratas, Armando J. Pinho. Analysis of DNA sequences using finite-context modelling and compression. Proc. of the 16th Portuguese Conf. on Pattern Recognition, RecPad 2010, Vila Real, Portugal, October 2010
- Diogo Pratas, Armando J. Pinho, António J. R. Neves, Carlos A C Bastos. DNA synthetic sequences generated by finite-context models. Proc. of the 16th Portuguese Conf. on Pattern Recognition, RecPad 2010, Vila Real, Portugal, October 2010