João M. O. S. Rodrigues

Position	Aux. professor
Affiliation	DETI / University of Aveiro
Group	Information Systems and Processing
Status	Researcher with PhD
Country	Portugal
Students
Former PhD students
Former masters students	Show list
Courses	Fundamentos de Programação, Programação 1, Programação 2
Projects
Past projects	CAMBADA, CLA: Training Health Professionals to use Computerised Lung Auscultation, DNA symmetry, NeuroPath, Pervasive Tourism, RSAT: Respiratory Sound Assessment Toolkit, SAICT, Sounds4Health
Events	HCist 2015, ICASSP 2011, PACBB 2014
Proposals	DigitalStethoscope, FilmScanner
Personal page

ORCID: 0000-0001-9187-8094

ResearcherID: G-4821-2011

Scopus Author IDs: This ID contains most of my papers: 35194550700

(But this may change: Scopus is quite volatile!)

Publications

Articles in international journals listed in the ISI

• Ana H. M. P. Tavares, Armando J. Pinho, Raquel Silva, João M. O. S. Rodrigues, Carlos A C Bastos, Paulo J S G Ferreira, Vera Afreixo. DNA word analysis based on the distribution of the distances between symmetric words. Scientific Reports, vol. 7, no. 728, April 2017 [IF 2015: 5.228 (Q1, 7/63)]
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Ana H.M.P. Tavares, Raquel Silva. Exceptional symmetry by genomic word. Interdisciplinary Sciences: Computational Life Sciences, January 2017 [IF 2015: 0.853 (Q4, 44/56)]
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Raquel Silva. The exceptional genomic word symmetry along DNA sequences. BMC Bioinformatics, vol. 17, no. 59, p. 1-10, February 2016 [IF 2015: 2.435 (Q1, 10/56)]
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Analysis of single-strand exceptional word symmetry in the human genome: new measures. Biostatistics, vol. 16, no. 2, p. 209-221, April 2015 [IF 2015: 2.109 (Q1, 13/123)]
• Marlene Cristina Neves Rosa, Alda Marques, Sara Demain, Cheryl D. Metcalf, João M. O. S. Rodrigues. Methodologies to assess muscle co-contraction during gait in people with neurological impairment – A systematic literature review. Journal of Electromyography & Kinesiology, vol. 24, no. 2, p. 179-191, April 2014 [IF 2014: 1.647 (Q2, 25/64)]
• Diogo Pratas, Armando J. Pinho, João M. O. S. Rodrigues. XS: a FASTQ read simulator. BMC Research Notes, vol. 7, no. 40, January 2014
• Vera Afreixo, Carlos A C Bastos, Sara Pinto Garcia, João M. O. S. Rodrigues, Armando J. Pinho, Paulo J S G Ferreira. The breakdown of word symmetry in the human genome. Journal of Theoretical Biology, vol. 335, p. 153-159, October 2013 [IF 2013: 2.303 (Q1, 10/52)]
• Sara Pinto Garcia, João M. O. S. Rodrigues, Sérgio Santos, Diogo Pratas, Vera Afreixo, Carlos A C Bastos, Paulo J S G Ferreira, Armando J. Pinho. A genomic distance for assembly comparison based on compressed maximal exact matches. IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 3, p. 793-798, May 2013 [IF 2013: 1.536 (Q1, 24/119)]
• João Silva, Nuno Lau, António J. R. Neves, João M. O. S. Rodrigues, José Luís Azevedo. World modeling on an MSL robotic soccer team. Mechatronics, vol. 21, no. 2, p. 411-422, March 2011 [IF 2011: 1.255 (Q1, 28/122)]
• Sara Pinto Garcia, Armando J. Pinho, João M. O. S. Rodrigues, Carlos A C Bastos, Paulo J S G Ferreira. Minimal absent words in prokaryotic and eukaryotic genomes. PLoS ONE, vol. 6, no. 1, p. e16065, January 2011 [IF 2011: 4.092 (Q1, 12/85)] [IF 2015: 3.057 (Q1, 11/63)]
• Armando J. Pinho, Paulo J S G Ferreira, Sara Pinto Garcia, João M. O. S. Rodrigues. On finding minimal absent words. BMC Bioinformatics, vol. 10, no. 1, p. 137, May 2009 [IF 2009: 3.428 (Q1, 4/29)] [IF 2015: 2.435 (Q1, 10/56)]
• João M. O. S. Rodrigues, Ana Maria Tomé. On the Use of Backward Adaptation in a Perceptual Audio Coder. IEEE Transactions on Speech and Audio Processing, vol. 8, no. 4, p. 488-490, July 2000

Other articles in journals

• Cátia Pinho, Ana Oliveira, Cristina Jácome, João M. O. S. Rodrigues, Alda Marques. Integrated Approach for Automatic Crackle Detection Based on Fractal Dimension and Box Filtering. International Journal of Reliable and Quality E-Healthcare (IJRQEH), vol. 5, no. 4, p. 34--50, September 2016
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Exceptional single strand DNA word symmetry: analysis of evolutionary potentialities. Journal of Integrative Bioinformatics, vol. 11, no. 3, p. 250, October 2014
• Vera Afreixo, Sara Pinto Garcia, João M. O. S. Rodrigues. The breakdown of symmetry in word pairs in 1,092 human genomes. Jurnal Teknologi, vol. 63, no. 3, p. 1-8, August 2013
• Carlos A C Bastos, Vera Afreixo, Armando J. Pinho, Sara Pinto Garcia, João M. O. S. Rodrigues, Paulo J S G Ferreira. Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions. Journal of Integrative Bioinformatics, vol. 8, no. 3, September 2011
• João M. O. S. Rodrigues, Ana Maria Tomé. Audio Compression: Discussion of an Alternative Approach. Electrónica e Telecomunicações - Revista do DETUA, vol. 3, no. 4, p. 362-364, September 2001
• Lars Rüdiger, João M. O. S. Rodrigues, Ana Maria Tomé. Advanced Audio Compression for Multimedia. Electrónica e Telecomunicações - Revista do DETUA, vol. 2, no. 6, p. 718-723, September 1999
• João M. O. S. Rodrigues, Ana Maria Tomé. Codificação Perceptual de Áudio usando Quantização Retro-Adaptativa. Electrónica e Telecomunicações - Revista do DETUA, vol. 1, no. 7, p. 621-626, January 1997

Chapters in books

• António J. R. Neves, José Luís Azevedo, Bernardo Cunha, Nuno Lau, João Silva, Frederico Santos, Gustavo Corrente, Daniel A. Martins, Nuno Figueiredo, Artur Pereira, Luís Almeida, Luís Seabra Lopes, Armando J. Pinho, João M. O. S. Rodrigues, Paulo Pedreiras. CAMBADA soccer team: from robot architecture to multiagent coordination. Robot Soccer, Vladan Papic (Ed.), INTECH, p. 19-45, January 2010

Articles in conference proceedings

• Vera Enes, João M. O. S. Rodrigues, Vera Afreixo. Single nucleotide variation context in human genome. Proceedings of RecPad 2016, Aveiro, Portugal, p. 105--107, October 2016
• Ana H.M.P. Tavares, João M. O. S. Rodrigues, Carlos A C Bastos, Armando J. Pinho, Paulo J S G Ferreira, Paula Brito, Vera Afreixo. Detection of exceptional genomic words: a comparison between species. Proceedings of COMPSTAT 2016 (22nd International Conference on Computational Statistics), Oviedo, Spain, p. 255--266, August 2016
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Raquel Silva. Exceptional symmetry profile: a genomic word analysis. International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB), Sevilla, Spain, vol. 477 (in Springer series Advances in Intelligent Systems and Computing), p. 151--159, June 2016
• Vera Afreixo, Carlos A C Bastos, João M. O. S. Rodrigues, Raquel Silva. Identification of DNA CpG Islands Using Inter-dinucleotide Distances. Optimization in the Natural Sciences. 30th Euro Mini-Conference, EmC-ONS 2014. Aveiro, Portugal, February 5–9, 2014. Revised Selected Papers. (Series: Communications in Computer and Information Science), Springer International Publishing, Switzerland, vol. 499, p. 162-172, 2015
• Cátia Pinho, Ana Oliveira, Cristina Jácome, João M. O. S. Rodrigues, Alda Marques. Automatic Crackle Detection Algorithm Based on Fractal Dimension and Box Filtering. Conference on Health and Social Care Information Systems and Technologies, HCist 2015, Vilamoura, Portugal, vol. Procedia Computer Science, 64, p. 705--712, October 2015
• José Semedo, Ana Oliveira, Ana Machado, José Moreira, João M. O. S. Rodrigues, José Aparício, Hans Pasterkamp, Luis M. T. Jesus, Alda Marques. Computerised Lung Auscultation – Sound Software (CLASS). Conference on Health and Social Care Information Systems and Technologies, HCist 2015, Vilamoura, Portugal, vol. Procedia Computer Science, 64, p. 697--704, October 2015
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Exploring the exceptional genomic word symmetry among regions (Poster). 2015 annual workshop on Statistical Methods for Post Genomic Data (SMPGD), Munich, Germany, February 2015
• Ana Helena Tavares, Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. The Symmetry of Oligonucleotide Distance Distributions in the Human Genome. ICPRAM 2015 - 4th International Conference on Pattern Recognition Applications and Methods, Lisbon, vol. 2, p. 256-263, January 2015
• Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos. Exceptional Single Strand DNA Word Symmetry: Universal Law?. 8th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2014), Salamanca, Spain, vol. Advances in Inteligent Systems and Computing 294, p. 137-143, June 2014
• Vera Afreixo, João M. O. S. Rodrigues, Sara Pinto Garcia. Analysis of word symmetries in human genomes using next-generation sequencing data. 7th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB), Salamanca, Spain, vol. Advances in Intelligent Systems and Computing, 222, p. 7-13, May 2013
• Marlene C. Rosa, Alda S. Marques, João M. O. S. Rodrigues, Cheryl D. Metcalf, Sara H. Demain. Is the symmetry of double support phase a good predictor of gait speed recovery in subjects with stroke? (Poster). European Stroke Conference 2013, London, p. 264, May 2013
• Marlene C. Rosa, Alda S. Marques, João M. O. S. Rodrigues, Cheryl D. Metcalf, Sara H. Demain. Relationship between the time spent in double support phase of gait and the knee strength in subjects with stroke (Poster). European Stroke Conference 2013, London, p. 263, May 2013
• João Dinis, Ana Oliveira, Cátia Pinho, Guilherme Campos, João M. O. S. Rodrigues, Alda Marques. Automatic wheeze and respiratory phase detectors to evaluate respiratory physiotherapy in LRTI. 6th International Conference on Health Informatics (HEALTHINF 2013), Barcelona, Spain, February 2013
• Sérgio Santos, João M. O. S. Rodrigues, Vera Afreixo, Sara Pinto Garcia. Word count variation in 1,092 human genomes. (Poster). Proceedings of the 18th Portuguese Conference on Pattern Recognition (RECPAD), Coimbra, Portugal, October 2012
• Sara Pinto Garcia, João M. O. S. Rodrigues, Diogo Pratas, Armando J. Pinho. Comparing maximal exact repeats in human genome assemblies using a normalized compression distance. 20th Annual International Conference on Intelligent Systems for Molecular Biology, Long Beach, California, USA, July 2012
• João Dinis, Guilherme Campos, João M. O. S. Rodrigues, Alda Marques. Respiratory Sound Annotation Software. Proceedings of HEALTHINF 2012 - International Conference on Health Informatics, Vilamoura, Portugal, p. 183-188, February 2012
• João Cunha, Nuno Lau, João M. O. S. Rodrigues. Ball Interception Behaviour in Robotic Soccer. RoboCup 2011: Robot Soccer World Cup XV, Istanbul, Turkey, July 2011
• Carlos A C Bastos, Vera Afreixo, Armando J. Pinho, Sara Pinto Garcia, João M. O. S. Rodrigues, Paulo J S G Ferreira. Distances between dinucleotides in the human genome. Advances in Intelligent and Soft Computing, Proc. of the 5th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, Salamanca, Spain, vol. 93, p. 205-211, April 2011
• Armando J. Pinho, Sara Pinto Garcia, Paulo J S G Ferreira, Vera Afreixo, Carlos A C Bastos, António J. R. Neves, João M. O. S. Rodrigues. Exploring homology using the concept of three-state entropy vector. Pattern Recognition in Bioinformatics, 5th IAPR International Conference, PRIB 2010, Nijmegen, The Netherlands, vol. LNBI 6282, p. 161-170, September 2010
• João Silva, Nuno Lau, João M. O. S. Rodrigues, José Luís Azevedo, António J. R. Neves. Sensor and information fusion applied to a Robotic Soccer Team. RoboCup 2009: Robot Soccer World Cup XIII, Graz, Austria, vol. LNAI 5949, p. 366-377, February 2010
• ...further results

PhD thesis

• João M. O. S. Rodrigues. Codificação digital de áudio baseada em retroadaptação perceptual. PhD Thesis, Universidade de Aveiro, December 2004

Masters thesis

• João M. O. S. Rodrigues. Compressão Digital de Sinais Áudio Aplicando Critérios Perceptuais e Adaptação para Trás. Masters Thesis, Universidade de Aveiro, November 1995

Projects