Joel Arrais
From IEETA
| Group | Information Systems and Telematics Laboratory |  |
|---|---|---|
| Transverse activity | Transverse Activity on Innovative Biomedical Technologies | |
| Status | Integrated member | |
| Country | Portugal | |
| Students | Fernanda Barbosa | |
| Projects | GEN2PHEN, QueryTermExp | |
| Past projects | ||
| Events | ||
| Proposals | ||
| Personal page | http://joelarrais.info | |
Contents |
Publications
Articles in international journals listed in the ISI
- Sara C. Novais, Joel Arrais, Pedro Lopes, Tine Vandenbrouck, Wim De Coen, Dick Roelofs, Amadeu M. V. M. Soares, Mónica J. B. Amorim. Enchytraeus albidus Microarray: Enrichment, Design, Annotation and Database (EnchyBASE). PLoS ONE, vol. 7, no. 4, April 2012 (IF 2010: 4.411)
- Nuno Rosa, Maria João Correira, Joel Arrais, Pedro Lopes, José Melo, José Luís Oliveira, Marlene Barros. From the salivary proteome to the OralOme: Comprehensive molecular oral biology. Archives of Oral Biology, January 2012 (IF 2010: 1.463)
- Joel Arrais, João Fernandes, João Pereira, José Luís Oliveira. GeneBrowser 2: an application to explore and identify common biological traits in a set of genes. BMC Bioinformatics, vol. 11, no. 389, July 2010 (IF 2010: 3.028)
- Sérgio Matos, Joel Arrais, João Maia-Rodrigues, José Luís Oliveira. Concept-based query expansion for retrieving gene related publications from MEDLINE. BMC Bioinformatics, vol. 11, no. 212, April 2010 (IF 2010: 3.028)
- Ana R. Soares, Patricia M. Pereira, Bruno Santos, Conceição Egas, Ana C. Gomes, Joel Arrais, José Luís Oliveira, Gabriela Moura, Manuel A. S. Santos. Parallel DNA pyrosequencing unveils new zebrafish microRNAs. BMC Genomics, vol. 10, April 2009 (IF 2009: 3.759) (IF 2010: 4.206)
- Gabriela Moura, Miguel Pinheiro, Joel Arrais, Ana Cristina Gomes, Laura Carreto, Adelaide Freitas, José Luís Oliveira, Manuel A. S. Santos. Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure. PLoS ONE, vol. 2, no. 9, September 2007 (IF 2010: 4.411)
Other articles in journals
- Joel Arrais, José Luís Oliveira. Using biomedical networks to prioritize gene–disease associations. Open Access Bioinformatics, vol. 2011:3, p. 123-130, August 2011
- Joel Arrais, Bruno Santos, João Fernandes, Laura Carreto, Manuel A. S. Santos, José Luís Oliveira. GeneBrowser: an approach for integration and functional classification of genomics data. Journal of Integrative Bioinformatics, vol. 4, no. 3, October 2007
Chapters in books
- Joel Arrais, Sérgio Matos, José Luís Oliveira. Expansão de termos de pesquisa usando redes de conceitos associadas a genes. Nuevas Fronteras Tecnológicas, Alejandre Pazos (Ed.), CYTED, 2010
Articles in proceedings of international conferences
- Joel Arrais, Pedro Lopes, José Luís Oliveira. Challenges Storing and Representing Biomedical Data. Information Quality in e-Health: 7th Conference of the Workgroup Human-Computer Interaction and Usability Engineering of the Austrian Computer Society, USAB 2011, Graz, Austria, vol. LNCS 7058, p. 53-62, November 2011
- Joel Arrais, José Luís Oliveira. Gene-disease prioritization through biomedical networks. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010), November 2010
- Joel Arrais, José Luís Oliveira. On the exploitation of cloud computing in Bioinformatics. 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010), November 2010
- Sérgio Matos, Joel Arrais, José Luís Oliveira. Expanding Gene-based PubMed Queries. Proceedings of the 4th International Workshop on Practical Applications of Computational Biology and Bioinformatics 2010 (IWPACBB 2010), Guimarães, Portugal, vol. 74, p. 61-68, June 2010
- Joel Arrais, João Pereira, Pedro Lopes, Sérgio Matos, José Luís Oliveira. Improving cross mapping in biomedical databases. 4th International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2010), June 2010
- Pedro Lopes, Joel Arrais, José Luís Oliveira. DynamicFlow: A Client-Side Workflow Management System. 10th International Work-Conference on Artificial Neural Networks (IWANN 2009), Salamanca, Spain, vol. 5518, p. 1101-1108, June 2009
- Pedro Lopes, Joel Arrais, José Luís Oliveira. Dynamic Service Integration using Web-based Workflows. 10th International Conference on Information Integration and Web Applications & Services, Linz, Austria, November 2008
- Joel Arrais, João G. L. M. Rodrigues, José Luís Oliveira. Improving Literature Searches in Gene Expression Studies. 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 08), Salamanca, Spain, vol. 49, p. 74-82, October 2008
- Valery Sklyarov, Iouliia Skliarova, Bruno Pimentel, Joel Arrais. Hardware/Software Implementation of FPGA-targeted Matrix-Oriented SAT Solvers. Proceedings of the 14th International Conference on Field-Programmable Logic and Applications - FPL'2004, Belgium, p. 922-926, September 2004
PhD thesis
- Joel Arrais. Sistemas de informação para DNA microarrays. PhD Thesis, Universidade de Aveiro, March 2010