José Maria Fernandes

Position	Aux. professor
Group	Signal Processing Laboratory
Transverse activity	Transverse Activity on Innovative Biomedical Technologies
Status	Integrated member
Country	Portugal
Students
Former PhD students
Former masters students	Show list
Courses	Análise e Modelação de Sistema, Mobile Computing, Projecto em Engenharia Informática, Software Engineering
Projects	Diamarker, MISC, VitalResponder
Past projects
Events	ECSA 2011 - European Conference on Software Architecture, HBM 2011, ICIAR2011, ICPRAM 2012
Proposals
Personal page

Publications

Articles in international journals listed in the ISI

• João Paulo Cunha, José Maria Fernandes, Astrid Petters, Candas Bilgin, Jan Rémi, Zulfiya Mirzadjanova, José Gonzalez-Vitores, Soheyl Noachtar. Quantitative Analysis of Upper Limb Automatisms in Temporal and Frontal Lobe Epilepsy. Epilepsia, vol. 51, no. S4, p. 53-53, June 2010 (IF 2010: 3.955)
• João Paulo Cunha, José Maria Fernandes, Virgilio Bento, L. Paula, F. Oliveira, C. Bilgin, S. Noachtar. 3D movement quantification in epilepsy: new contribution for quantitative semiology analysis. Epilepsia, vol. 50, no. s10, p. 84, October 2009 (IF 2009: 4.052) (IF 2010: 3.955)
• José Maria Fernandes, João Paulo Cunha, Sérgio Tafula, S. Brandao, A. Bastos Leite, I. Ramos. Video-EEG-FMRI: A proximal in-bore video-EEG system within a 3T MRI scanner. Epilepsia, vol. 50, no. s10, p. 130, October 2009 (IF 2009: 4.052) (IF 2010: 3.955)
• N. F. Lori, José Maria Fernandes, S. Brandão, A. Bastos Leite, João Paulo Cunha. Separating sensory and motor BOLD functional MRI activations using q-ball white matter fibre tracking in humans. European Journal of Neurology, vol. 15, no. s3, p. 295, August 2008 (IF 2008: 2.732) (IF 2010: 3.765)
• José Maria Fernandes, F. Sales, João Paulo Cunha. Epigauss: Lateralization value of a new automated analysis software based on spike dipole densities and spatial clustering. Epilepsia, vol. 48, no. s6, p. 3–4, October 2007 (IF 2007: 3.569) (IF 2010: 3.955)
• José Maria Fernandes, A. Leal, João Paulo Cunha. EpiGauss: Analysing spatiotemporal patterns in occipital epilepsy. Epilepsia, vol. 47, no. s3, p. 152, 2006 (IF 2006: 3.526) (IF 2010: 3.955)
• José Maria Fernandes, A. M. da Silva, G. Huiskamp, D. N. Velis, I. Manshanden, J. C. de Munck, F. L. da Silva, João Paulo Cunha. What does an epileptiform spike look like in MEG? Comparison between coincident EEG and MEG spikes. Journal of Clinical Neurophysiology, vol. 22, no. 1, p. 68-73, January 2005
• José Maria Fernandes, A. M. da Silva, G. Huiskamp, D. N. Velis, I. Manshanden, J. C. de Munck, F. L. da Silva. Differences between spike in EEG and MEG: A quantification. Epilepsia, vol. 45, no. s7, p. 67-68, 2004 (IF 2004: 3.329) (IF 2010: 3.955)
• Z. J. Li, I. Soares, José Maria Fernandes, João Paulo Cunha. A new multimedia system for assessment of attachment and physiological measures: An enhanced PC-based tool for AAI assessment. International Journal of Psychophysiology, vol. 54, no. 1-2, p. 140, September 2004
• José Maria Fernandes, A. J. R. Leal, João Paulo Cunha. Clusters of interictal spike dipoles in hypothalamic hamartoma epilepsy. Epilepsia, vol. 44, no. s8, p. 48, 2003 (IF 2010: 3.955)

Chapters in books

• Ilídio Oliveira, Eduardo Dias, Luís Alves, João Barros, Jorge Silva, Miguel Monteiro, António Sousa Pereira, José Maria Fernandes, Aurélio Campinho, João Paulo Cunha. Extending a desktop endoscopic capsule video analysis tool used by doctors with advanced computing resources. IberGrid2011 5th Iberian Grid Infrastructure Conference, I. Campos Placencia, J. Marco de Lucas, J. Gomes, G. Barreira (Ed.), Spain: NetBiblo S.L., La Coruña, p. 156-168, 2011
• Miguel Moreira, Paulo Dias, Miguel Cordeiro, Gustavo Santo, José Maria Fernandes. A Framework for Cerebral CT Perfusion Imaging Methods Comparison. ICIAR 2010, part II, A Campilho, M Kamel (Ed.), Springer Berlin / Heidelberg, vol. LNCS 6112, p. pp141-150, 2010
• David Pacheco, Ilídio Oliveira, José Maria Fernandes, João Paulo Cunha. MAGI: A medical application Grid interfacing portal for eScience. 3rd Iberian Grid Infrastructure Conference (IberGrid'09)D, V. Hernández Garcia, G. Barreira, I. Blanquer Espert, J. Gomes (Ed.), Spain: NetBiblo S.L., La Coruña, p. 31-42, 2010
• João Paulo Cunha, José Maria Fernandes, Ilídio Oliveira, Micael Pedrosa, Luís Alves, António Sousa Pereira. The Portuguese BING network: Towards a brain imaging Grid virtual community. 3rd Iberian Grid Infrastructure Conference (IberGrid'09), V. Hernández Garcia, G. Barreira, I. Blanquer Espert, J. Gomes (Ed.), Valencia, Spain: NetBiblo S.L., La Coruña, 2009
• Ilídio Oliveira, José Maria Fernandes, Luís Alves, António Sousa Pereira, João Paulo Cunha. GERES-med: An Architecture for Grid-Enabled scientific REpositorieS for medical applications. IBERGRID 2008 - 2nd Iberian Grid Infrastruture Conference, Porto, Portugal, Netbiblo, S.L., p. 163-173, 2008

Articles in proceedings of international conferences

• José Maria Fernandes, Sérgio Tafula, João Paulo Cunha. 3D-Video-fMRI: 3D motion tracking in a 3T MRI environment. M Kamel, A. Campilho (eds) ICIAR2011, vol. LNCS 6754, p. 59-67, 2011
• José Maria Fernandes, Sérgio Tafula, João Paulo Cunha. Different fMRI activations if a response box or a 3D movement tracking system is used. Human Brain Mapping 2011, Quebec City, Canada, 2011
• Francisco Xavier, José Maria Fernandes, Ilídio Oliveira, Guilherme Campos. Análise paralela de imagem endoscópica com recurso a GPU. INForum - Simpósio de Informática, 8/9 Setembro de 2011, Coimbra, Portugal, September 2011
• Vishal Dwivedi, Perla Velasco-Elizondo, José Maria Fernandes, David Garlan, Bradley Schmerl. An Architectural Approach to End User Orchestrations. Software Architecture: 5th European Conference, ECSA 2011, Essen, Germany, September 13-16, 2011. Proceedings (Lecture Notes in Computer Science / Programming and Software Engineering), p. p 370-378, August 2011
• Márcio Colunas, José Maria Fernandes, Ilídio Oliveira, João Paulo Cunha. Droid Jacket: Using an Android based smartphone for team monitoring. Wireless Communications and Mobile Computing Conference (IWCMC), 2011 7th International, p. 2157 - 2161, July 2011
• Márcio Colunas, José Maria Fernandes, Ilídio Oliveira, João Paulo Cunha. DroidJacket: An Android-based application for first responders monitoring. Information Systems and Technologies (CISTI), 2011 6th Iberian Conference on, p. 15-18, June 2011
• João Paulo Cunha, José Maria Fernandes, Virgilio Bento, Luis Paula, Eduardo Dias, C. Bilgin, Soheil Noachtar. 2D versus 3D approaches to movement quantification in epileptic seizures: Simulations and real seizures comparative evaluation. 9th European Congress on Epileptology, Rhodes, Greece, 2010
• João Paulo Cunha, Sérgio Tafula, José Maria Fernandes. 3D video-fMRI: Tri-dimensional video-based movement quantification in a 3T fMRI environment. Human Brain Mapping 2010, Barcelona, Spain., 2010
• Ilídio Oliveira, Luís Alves, Eduardo Dias, David Pacheco, Sérgio Lima, João Barros, Miguel P. Monteiro, J.A. Silva, José Maria Fernandes, João Paulo Cunha, António Sousa Pereira. Automated endoscopic capsule analysis using a Grid computing environment. IBERGRID'2010, Braga, Portugal., 2010
• João Paulo Cunha, José Maria Fernandes, A. Peters, C. Bilgins, J. Remi, Z. Mirzadjanona, J.A. Gonzalez-Victores, Soheil Noatchar. Quantitative Analysis of Upper Limb Automatisms in Temporal and Frontal Lobe Epilepsy. 9th European Congress on Epileptology, Rhodes, Greece., 2010
• João Paulo Cunha, José Maria Fernandes, Virgilio Bento, Luís Paula, F. Oliveira, C. Bilgin, Soheil Noachtar. 3D Movement Quantification in Epilepsy: New Contribution for Quantitative Semiology Analysis. Proc. of the 28th Int. Epilepsy Congress, Budapest, Hungary, 2009
• Mohammed S. Al-Rawi, José Maria Fernandes, Sérgio Tafula, João Paulo Cunha. Association Analysis of Biosignals using Self Organizing Maps. Proceedings of the Medical Physics and Biomedical Engineering World Congress, Munich, Germany, 2009
• João Paulo Cunha, C. Vollmar, José Maria Fernandes, Soheil Noachtar. Automated Epileptic Seizure Type Classification through Quantitative Movement Analysis. Proceedings of the Medical Physics and Biomedical Engineering World Congress, Munich, Germany, 2009
• Ilídio Oliveira, João Paulo Cunha, David Pacheco, José Maria Fernandes, Micael Pedrosa, Luís Alves, António Sousa Pereira. The Portuguese BING Network: Towards a Brain Imaging Grid Virtual Community. MICCAI-Grid, London, UK, 2009
• José Maria Fernandes, João Paulo Cunha, Sérgio Tafula, Sofia Brandão, A. Bastos Leite, I. Ramos. Video-EEG-fMRI: a proximal in-bore Video-EEG system within a 3T MRI scanner. Proceedings of the 28th International Epilepsy Congress , Budapest, Hungary, 2009, 2009
• Micael Pedrosa, Luís Alves, Ilídio Oliveira, José Maria Fernandes, João Paulo Cunha. A Sysytem Architecture for the BING Brain Image Network Grid. 2nd International Conference on Health Informatics (HEALTHINF 2009), Porto, Portugal, p. 276-281, January 2009
• Rodolfo Andrade, Ilídio Oliveira, José Maria Fernandes, João Paulo Cunha. A Grid framework for non-linear brain fMRI analysis. Studies in Health Technology and Informatics, Geneva, Switzerland, vol. 126, p. 299-305, April 2007

PhD thesis

• José Maria Fernandes. EpiGauss: caracterização espacio-temporal da actividade cerebral em epilepsia. PhD Thesis, Universidade de Aveiro, March 2007