José Maria Fernandes

Position	Aux. professor
Affiliation	DETI / University of Aveiro
Group	Biomedical Informatics and Technologies
Status	Researcher with PhD
Country	Portugal
Students
Former PhD students	Ana Patrícia Oliveira Ferreira da Rocha, Virgilio Bento
Former masters students	Show list
Courses	Análise e Modelação de Sistema, Introduction to Software Engineering, Mobile Computing, Projecto em Engenharia Informática, Software Engineering
Projects	S2MovingCity
Past projects	Autistic Spectrum Disorders, Cloud Thinking, Diamarker, MISC, MyPointingDevice, VR2, VR2Market, VitalResponder, epSOS
Events	ECSA 2011 - European Conference on Software Architecture, HBM 2011, ICIAR2011, ICPRAM 2012, INForum 2017, ISMIS'2017
Proposals
ORCID	0000-0002-0681-9354
Personal page

Publications

Books

• João Paulo Barraca, Helena Rodrigues, António J. S. Teixeira, José Maria Fernandes. INForum 2017: Atas do Nono Simpósio de Informática. UA Editora, 2017

Articles in international journals listed in the ISI

• Maria do Carmo Vilas-Boas, Ana Patrícia Oliveira Ferreira da Rocha, Hugo Choupina, Márcio Cardoso, José Maria Fernandes, Teresa Coelho, João Paulo Cunha. Validation of a Single RGB-D Camera for Gait Assessment of Polyneuropathy Patients. Sensors, vol. 19, no. 22, p. 4929, November 2019 [IF 2017: 2.475 (Q2, 16/61)]
• Susana Brás, Sandra C. Soares, Telmo Cruz, Tiago Magalhães, Bernardo Marques, Cláudia Dantas, Nuno Fernandes, José Maria Fernandes. The Feasibility of an Augment Reality System to Study the Psychophysiological Correlates of Fear-Related Responses. Brain and Behavior, vol. 8, p. e01084, September 2018 [IF 2017: 2.219 (Q3, 30/51)]
• Ana Patrícia Oliveira Ferreira da Rocha, Hugo Choupina, Maria do Carmo Vilas-Boas, José Maria Fernandes, João Paulo Cunha. System for automatic gait analysis based on a single RGB-D camera. PLoS ONE, vol. 13, no. 8, August 2018 [IF 2017: 2.766 (Q1, 15/64)]
• Raquel Sebastião, José Maria Fernandes, Sandra Sorte, Joana Valente, Ana I. Miranda. Detecting changes in the heart rate of firefighters to prevent smoke inhalation and health effects. Evolving Systems, June 2018
• Susana Brás, Sandra Soares, Ricardo Moreira, José Maria Fernandes. BeMonitored: Monitoring psychophysiology and behavior using Android in phobias. Behavior Research Methods, vol. 48, no. 3, p. 1100-1108, September 2016 [IF 2016: 3.623 (Q1, 1/13)]
• João Paulo Cunha, Hugo Miguel Pereira Choupina, Ana Patrícia Oliveira Ferreira da Rocha, José Maria Fernandes, Felix Achilles, Anna Mira Loesch, Christian Vollmar, Elisabeth Hartl, Soheyl Noachtar. NeuroKinect: A Novel Low-Cost 3Dvideo-EEG System for Epileptic Seizure Motion Quantification. PLoS ONE, vol. 11, no. 1, p. e0145669, January 2016 [IF 2016: 2.806 (Q1, 15/64)] [IF 2017: 2.766 (Q1, 15/64)]
• Sophie Donnet, Ramon Bartolo, José Maria Fernandes, João Paulo Cunha, Luis Prado, Hugo Merchant. Monkeys time their pauses of movement and not their movement-kinematics during a synchronization-continuation rhythmic task. Journal of Neurophysiology, vol. 111, no. 10, p. 2138-49, February 2014 [IF 2014: 2.887 (Q2, 29/83)]
• João Paulo Cunha, Jan Rémi, Christian Vollmar, José Maria Fernandes, Jose A. Gonzalez-Victores, Soheyl Noachtar. Upper limb automatisms differ quantitatively in temporal and frontal lobe epilepsies. Epilepsy & Behavior, vol. 27, no. 2, p. 404-408, May 2013 [IF 2013: 2.061, 2.061 (Q3, Q3, 70/136, 70/136)]
• João Paulo Cunha, José Maria Fernandes, Astrid Petters, Candas Bilgin, Jan Rémi, Zulfiya Mirzadjanova, José Gonzalez-Vitores, Soheyl Noachtar. Quantitative Analysis of Upper Limb Automatisms in Temporal and Frontal Lobe Epilepsy. Epilepsia, vol. 51, no. S4, p. 53-53, June 2010 [IF 2010: 3.955]
• João Paulo Cunha, José Maria Fernandes, Virgilio Bento, L. Paula, F. Oliveira, C. Bilgin, S. Noachtar. 3D movement quantification in epilepsy: new contribution for quantitative semiology analysis. Epilepsia, vol. 50, no. s10, p. 84, October 2009 [IF 2009: 4.052]
• José Maria Fernandes, João Paulo Cunha, Sérgio Tafula, S. Brandao, A. Bastos Leite, I. Ramos. Video-EEG-FMRI: A proximal in-bore video-EEG system within a 3T MRI scanner. Epilepsia, vol. 50, no. s10, p. 130, October 2009 [IF 2009: 4.052]
• N. F. Lori, José Maria Fernandes, S. Brandão, A. Bastos Leite, João Paulo Cunha. Separating sensory and motor BOLD functional MRI activations using q-ball white matter fibre tracking in humans. European Journal of Neurology, vol. 15, no. s3, p. 295, August 2008 [IF 2008: 2.732]
• José Maria Fernandes, F. Sales, João Paulo Cunha. Epigauss: Lateralization value of a new automated analysis software based on spike dipole densities and spatial clustering. Epilepsia, vol. 48, no. s6, p. 3–4, October 2007 [IF 2007: 3.569]
• José Maria Fernandes, A. Leal, João Paulo Cunha. EpiGauss: Analysing spatiotemporal patterns in occipital epilepsy. Epilepsia, vol. 47, no. s3, p. 152, 2006 [IF 2006: 3.526]
• José Maria Fernandes, A. M. da Silva, G. Huiskamp, D. N. Velis, I. Manshanden, J. C. de Munck, F. L. da Silva, João Paulo Cunha. What does an epileptiform spike look like in MEG? Comparison between coincident EEG and MEG spikes. Journal of Clinical Neurophysiology, vol. 22, no. 1, p. 68-73, January 2005
• José Maria Fernandes, A. M. da Silva, G. Huiskamp, D. N. Velis, I. Manshanden, J. C. de Munck, F. L. da Silva. Differences between spike in EEG and MEG: A quantification. Epilepsia, vol. 45, no. s7, p. 67-68, 2004 [IF 2004: 3.329]
• Z. J. Li, I. Soares, José Maria Fernandes, João Paulo Cunha. A new multimedia system for assessment of attachment and physiological measures: An enhanced PC-based tool for AAI assessment. International Journal of Psychophysiology, vol. 54, no. 1-2, p. 140, September 2004
• José Maria Fernandes, A. J. R. Leal, João Paulo Cunha. Clusters of interictal spike dipoles in hypothalamic hamartoma epilepsy. Epilepsia, vol. 44, no. s8, p. 48, 2003

Chapters in books

• Hugo Choupina, Ana Patrícia Oliveira Ferreira da Rocha, José Maria Fernandes, Christian Vollman, S Noachtar, João Paulo Cunha. NeuroKinect 3.0: Multi-bed 3Dvideo-EEG system for epilepsy clinical motion monitoring. Studies in Health Technology and Informatics, vol. 247, p. 46-50, June 2018
• Paulo Azevedo, Fábio Marques, José Maria Fernandes, Jorge Humberto Amorim, Joana Valente, Ana Miranda, Carlos Borrego, João Paulo Cunha. A wearable technological solution for firefighters smoke exposure monitoring. Advances in Forest Fire Research, D.X. Viegas (Ed.), Imprensa da Universidade de Coimbra, http://dx.doi.org/10.14195/978-989-26-0884-6_144, 2014
• Diogo C Teles, Márcio M Colunas, José Maria Fernandes, Ilídio Oliveira, João Paulo Cunha. iVital: A Real Time Monitoring System for First Response Teams. Mobile Networks and Management, Kostas Pentikousis, Rui Aguiar, Susana Sargento, Ramón Agüero (Ed.), Springer Berlin Heidelberg, p. 396-404, 2012
• Ilídio Oliveira, Eduardo Dias, Luís Alves, João Barros, Jorge Silva, Miguel Monteiro, António Sousa Pereira, José Maria Fernandes, Aurélio Campinho, João Paulo Cunha. Extending a desktop endoscopic capsule video analysis tool used by doctors with advanced computing resources. IberGrid2011 5th Iberian Grid Infrastructure Conference, I. Campos Placencia, J. Marco de Lucas, J. Gomes, G. Barreira (Ed.), Spain: NetBiblo S.L., La Coruña, p. 156-168, 2011
• Miguel Moreira, Paulo Dias, Miguel Cordeiro, Gustavo Santo, José Maria Fernandes. A Framework for Cerebral CT Perfusion Imaging Methods Comparison. ICIAR 2010, part II, A Campilho, M Kamel (Ed.), Springer Berlin / Heidelberg, vol. LNCS 6112, p. 141-150, 2010
• David Pacheco, Ilídio Oliveira, José Maria Fernandes, João Paulo Cunha. MAGI: A medical application Grid interfacing portal for eScience. 3rd Iberian Grid Infrastructure Conference (IberGrid'09)D, V. Hernández Garcia, G. Barreira, I. Blanquer Espert, J. Gomes (Ed.), Spain: NetBiblo S.L., La Coruña, p. 31-42, 2010
• João Paulo Cunha, José Maria Fernandes, Ilídio Oliveira, Micael Pedrosa, Luís Alves, António Sousa Pereira. The Portuguese BING network: Towards a brain imaging Grid virtual community. 3rd Iberian Grid Infrastructure Conference (IberGrid'09), V. Hernández Garcia, G. Barreira, I. Blanquer Espert, J. Gomes (Ed.), Valencia, Spain: NetBiblo S.L., La Coruña, 2009
• Ilídio Oliveira, José Maria Fernandes, Luís Alves, António Sousa Pereira, João Paulo Cunha. GERES-med: An Architecture for Grid-Enabled scientific REpositorieS for medical applications. IBERGRID 2008 - 2nd Iberian Grid Infrastruture Conference, Porto, Portugal, Netbiblo, S.L., p. 163-173, 2008

Articles in conference proceedings

• Ana Patrícia Oliveira Ferreira da Rocha, José Maria Fernandes, Hugo Choupina, Maria do Carmo Vilas-Boas, João Paulo Cunha. Subject Identification Based on Gait Using a RGB-D Camera. Advances in Intelligent Systems and Computing, 10th International Conference on Soft Computing and Pattern Recognition, SoCPaR 2018; Porto; Portugal, https://doi.org/10.1007/978-3-030-17065-3_8, vol. 942, p. 76-85, January 2020
• Jorge Pereira, Susana Sargento, José Maria Fernandes. Decision support dashboard for traffic and environment analysis of a smart city. VEHITS 2018 - Proceedings of the 4th International Conference on Vehicle Technology and Intelligent Transport Systems, March 2018
• Samuel Silva, Sandra C. Soares, Susana Brás, José Maria Fernandes, Manuel Coroa, Nuno Madeira, Tiago Santos, Paulo J S G Ferreira. From the Lab into People’s Lives: Setting a Roadmap for Mental Healthcare Assistive Technologies derived from Psychophysiology. Proc. 26th European Congress of Psychiatry, Nice, France, March 2018
• Bruno Areias, Nuno Humberto, L Guardalben, José Maria Fernandes, Susana Sargento. Towards an automated flying drones platform. VEHITS 2018 - Proceedings of the 4th International Conference on Vehicle Technology and Intelligent Transport Systems, March 2018
• Raquel Sebastião, José Maria Fernandes. Supporting the Page-Hinkley Test with Empirical Mode Decomposition for Change Detection. Proceedings of the 23rd International Symposium on Methodologies for Intelligent Systems, p. 492-498, 2017
• Bernardo Marques, Susana Brás, Sandra C. Soares, José Maria Fernandes. Psychophysiology assessment tool using Virtual Reality. InForum Simpósio de Informática 2017, Aveiro, October 2017
• Maria do Carmo Vilas-Boas, Ana Patrícia Oliveira Ferreira da Rocha, Hugo Choupina, José Maria Fernandes, Teresa Coelho, João Paulo Cunha. The first Transthyretin Familial Amyloid Polyneuropathy gait quantification study - Preliminary results. Conf Proc IEEE Eng Med Biol Soc., p. 1368-1371, July 2017
• António J. R. Neves, Ricardo Ribeiro, José Maria Fernandes. Face Detection on Infrared Thermal Image. Proc. of Second International Conference on Advances in Signal, Image and Video Processing, SIGNAL 2017, Barcelona, Spain, p. 33-37, May 2017
• João Paulo Cunha, Ana Patrícia Oliveira Ferreira da Rocha, Hugo Choupina, José Maria Fernandes, Maria José Rosas, Rui Vaz, Felix Achilles, Anna Mira Loesch, Christian Vollmar, Elisabeth Hartl, Soheyl Noachtar. A novel portable, low-cost kinect-based system for motion analysis in neurological diseases. 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Orlando, FL, 2016, pp. 2339-2342. doi: 10.1109/EMBC.2016.7591199 URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7591199&isnumber=7590615, 2016
• Raquel Sebastião, Sandra Sorte, Joana Valente, Ana Miranda, José Maria Fernandes. Inhalation during fire experiments: an approach derived through ECG. Proceedings of the 2016 ACM International Joint Conference on Pervasive and Ubiquitous Computing: Adjunct (UbiComp '16). ACM, New York, NY, USA, 763-772., 2016
• Maria José Rosas, João Paulo Cunha, Ana Patrícia Oliveira Ferreira da Rocha, Hugo Choupina, José Maria Fernandes, Rui Vaz. Movement quantification for evaluation of gait in Parkinson's disease using a RGB‐D camera system. Movement Disorders 2015;30 Suppl 1 :2096, 2016
• Raquel Sebastião, Sandra Sorte, Joana Valente, Ana Miranda, José Maria Fernandes. Deriving ECG to compute inhalation during fire experiments. Proceedings of the 22nd Portuguese Conference on Pattern Recognition (RecPad 2016), Aveiro, Portugal, October 2016
• Tiago Magalhães, José Maria Fernandes, Ilídio Oliveira, Susana Brás. Initial validation of online ECG signal segmentation. 22nd Portuguese Conference on Pattern Recognition (RecPad), Aveiro, Portugal, October 2016
• Raquel Sebastião, José Maria Fernandes. Intrinsic Page Hinkley Test (iPHT). Proceedings of the 22nd Portuguese Conference on Pattern Recognition (RecPad 2016), Aveiro, Portugal, October 2016
• Bernardo Marques, Susana Brás, Sandra C. Soares, José Maria Fernandes. Psychophysiology assessment tool using Virtual Reality - Case Study. 22nd Portuguese Conference on Pattern Recognition (RecPad), Aveiro, Portugal, October 2016
• Paulo Rupino, José Maria Fernandes. Foreword to the 6th Portuguese Software Engineering Doctoral Symposium (SEDES 2016). Proceedings - 2016 10th International Conference on the Quality of Information and Communications Technology, QUATIC 2016, September 2016
• Ana Patrícia Oliveira Ferreira da Rocha, Hugo Choupina, José Maria Fernandes, Maria José Rosas, Rui Vaz, João Paulo Cunha. Kinect V2 Based System for Parkinson's Disease Assessment. Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE , DOI: 10.1109/EMBC.2015.7318601, 2015
• Luis Silva, José Maria Fernandes, Ilídio Oliveira. LIMBus: a lightweight remote monitoring system powered by iOS and BLE. Proceedings of MOBIQUITOUS 2015, 12th International Conference on Mobile and Ubiquitous Systems: Computing, Networking and Services, http://eudl.eu/doi/10.4108/eai.22-7-2015.2260249, 2015
• Tiago Magalhães, Ilídio Oliveira, José Maria Fernandes. Message based integration in Cyber-Physical System: firefighters in the field. Proceedings of MOBIQUITOUS 2015, 12th International Conference on Mobile and Ubiquitous Systems: Computing, Networking and Services, http://eudl.eu/doi/10.4108/eai.22-7-2015.2260246, 2015
• Paulo Santos, Susana Sargento, José Maria Fernandes. VANESS: DNS for Nomadic Users in Vehicular Networks. Proceedings of MOBIQUITOUS 2015, 12th International Conference on Mobile and Ubiquitous Systems: Computing, Networking and Services. http://eudl.eu/doi/10.4108/eai.22-7-2015.2260262, 2015
• ...further results

PhD thesis

• José Maria Fernandes. EpiGauss: caracterização espacio-temporal da actividade cerebral em epilepsia. PhD Thesis, Universidade de Aveiro, March 2007