Morteza Hosseini
From IEETA
| Subject | Relative compression and its application to pattern recognition problems |  |
|---|---|---|
| Advisor | Diogo Pratas, Armando J. Pinho | |
| Group | Information Systems and Processing | |
| Status | PhD student | |
| Starts | 2015/09/15 | |
| Ends | 2020/07/02 | |
| Country | Iran | |
| Projects | ||
| Past projects | ||
| Events | AlCoB'2017, PACBB'2017 | |
| Proposals | ||
| Personal page |
Contents |
Publications
Articles in international journals listed in the ISI
- Morteza Hosseini, Diogo Pratas, Burkhard Morgenstern, Armando J. Pinho. Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements. GigaScience, vol. 9, no. 5, May 2020 [IF 2020: 6.520 (Q1, 10/71)] [IF 2018: 4.688 (Q1, 13/69)]
- Diogo Pratas, Morteza Hosseini, Jorge Miguel Silva, Armando J. Pinho. A reference-free lossless compression algorithm for DNA sequences using a competitive prediction of two classes of weighted models. Entropy, vol. 21, p. 1074, November 2019 [IF 2018: 2.419 (Q2, 28/81)]
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. AC: A Compression Tool for Amino Acid Sequences. Interdisciplinary Sciences: Computational Life Sciences, vol. 11, no. 1, p. 68-76, March 2019 [IF 2018: 1.418 (Q3, 40/59)]
- Diogo Pratas, Morteza Hosseini, Gonçalo Grilo, Armando J. Pinho, Raquel Silva, Tânia Caetano, João Carneiro, Filipe Pereira. Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard. Genes, vol. 9, no. 9, p. 445, September 2018 [IF 2018: 3.331 (Q2, 61/174)]
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. Cryfa: a secure encryption tool for genomic data. Bioinformatics, p. bty645, July 2018 [IF 2018: 4.531 (Q1, 4/59)]
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. A Survey on Data Compression Methods for Biological Sequences. Information, vol. 7, no. 4, October 2016
Articles in conference proceedings
- Morteza Hosseini, Diogo Pratas, António Amorim, João Carneiro. Improving the detection of mtDNA rearrangements using a fast and accurate algorithm. XV Encontro Nacional de Biologia Evolutiva, Porto, Portugal, November 2019
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. Clustering DNA sequences by relative compression. 25th Portuguese Conference on Pattern Recognition, RecPad, Porto, Portugal, October 2019
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. A Probabilistic method to find and visualize distinct regions in protein sequences. Proceedings of the 27th European Signal Processing Conference, EUSIPCO 2019, A Coruña, Spain, September 2019
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences. Proceedings of the 13th International Conference on Practical Applications of Computational Biology & Bioinformatics, Avila, Spain, p. 137-145, June 2019
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes. Proceedings of the 13th International Conference on Practical Applications of Computational Biology & Bioinformatics, Avila, Spain, p. 129-136, June 2019
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Compression of amino acid sequences. PACBB 2018 - 12th International Conference on Practical Applications of Computational Biology & Bioinformatics, Toledo, Spain, June 2018
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Cryfa: a tool to compact and encrypt FASTA files. PACBB 2017 - 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, Portugal, vol. AISC 616, p. 305-312, June 2017
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. On the role of inverted repeats in DNA sequence similarity. PACBB 2017 - 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, Portugal, vol. AISC 616, p. 228-236, June 2017
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Substitutional tolerant Markov models for relative compression of DNA sequences. PACBB 2017 - 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, Portugal, vol. AISC 616, p. 265-272, June 2017
- Diogo Pratas, Morteza Hosseini, Raquel Silva, Armando J. Pinho, Paulo J S G Ferreira. Visualization of distinct DNA regions of the modern human relatively to a Neanderthal genome. IbPRIA 2017 - 8th Iberian Conference on Pattern Recognition and Image Analysis, Faro, Portugal, vol. LNCS 10255, p. 235-242, June 2017
PhD thesis
- Morteza Hosseini. Compression models and tools for omics data. PhD Thesis, University of Aveiro, July 2020