Raquel Silva
From IEETA
| Position | Post-doc researcher |  |
|---|---|---|
| Affiliation | iBiMED / IEETA | |
| Group | Biomedical Informatics and Technologies | |
| Status | Researcher with PhD | |
| Country | Portugal | |
| Students | Sara Pereira | |
| Former PhD students | ||
| Former masters students | ||
| Courses | ||
| Projects | NETDIAMOND | |
| Past projects | NeuroPath | |
| Events | ||
| Proposals | ||
| Personal page | ||
Contents |
Publications
Articles in international journals listed in the ISI
- Ana H. M. P. Tavares, Armando J. Pinho, Raquel Silva, João M. O. S. Rodrigues, Carlos A C Bastos, Paulo J S G Ferreira, Vera Afreixo. DNA word analysis based on the distribution of the distances between symmetric words. Scientific Reports, vol. 7, no. 728, April 2017 [IF 2015: 5.228 (Q1, 7/63)]
- Joana Branco, Mihaela Ola, Raquel Silva, Elizangela Fonseca, Nuno C. Gomes, Cláudia Martins-Cruz, Ana P. Silva, Ana Silva-Dias, Cidália Pina-Vaz, Claire Erraught, Lorraine Brennan, Acácio G. Rodrigues, Geraldine Butler, Isabel M. Miranda. Impact of ERG3 mutations and expression of ergosterol genes controlled by UPC2 and NDT80 in Candida parapsilosis azole resistance. Clinical Microbiology and Infection, February 2017 [IF 2015: 4.575 (Q1, 10/83)]
- Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Ana H.M.P. Tavares, Raquel Silva. Exceptional symmetry by genomic word. Interdisciplinary Sciences: Computational Life Sciences, January 2017 [IF 2015: 0.853 (Q4, 44/56)]
- Luisa Azevedo, Matthew Mort, Antonio C Costa, Raquel Silva, Dulce Quelhas, Antonio Amorim and David N Cooper. Improving the in silico assessment of pathogenicity for compensated variants. European Journal of Human Genetics, vol. 25, no. 1, p. 2-7, January 2017 [IF 2015: 4.580 (Q1, 30/166)]
- Filipe Pereira, Sara Pereira, Raquel Silva, Luis Teixeira da Costa, Isabel Pereira-Castro. Evolution of the NET (NocA, Nlz, Elbow, TLP-1) protein family in metazoans: insights from expression data and phylogenetic analysis. Scientific Reports, vol. 6, p. 38383, December 2016 [IF 2015: 5.228 (Q1, 7/63)]
- Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios Gkoutos, Afroza K. Irin, Lars J. Jensen, Silvia Jimenez, Toni R. Jue, Ingrid Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole Vasilevsky, Xiaodong Wang, Andrew Chatr-Aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna McEntyre, Sandra Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary Schaeffer, Cathy H. Wu, Lynette Hirschman, and Cecilia N. Arighi. Overview of the interactive task in BioCreative V. Database, vol. 2016, p. baw119, September 2016 [IF 2016: 3.290 (Q1, 8/57)] [IF 2015: 2.627 (Q1, 8/56)]
- Sérgio Matos, David Campos, Renato Pinho, Raquel Silva, Matthew Mort, David N. Cooper, José Luís Oliveira. Mining clinical attributes of genomic variants through assisted literature curation in Egas. Database, vol. 2016, June 2016 [IF 2016: 3.290 (Q1, 8/57)] [IF 2015: 2.627 (Q1, 8/56)]
- Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Raquel Silva. The exceptional genomic word symmetry along DNA sequences. BMC Bioinformatics, vol. 17, no. 59, p. 1-10, February 2016 [IF 2015: 2.435 (Q1, 10/56)]
- Sara Pereira, Isabel Pereira Castro, Sarah Silva, Mariana Gonçalves Correia, Célia Neto, Luis Teixeira da Costa, António Amorim, Raquel Silva. Extensive regulation of nicotinate phosphoribosyltransferase (NAPRT) expression in human tissues and tumors. Oncotarget, vol. 7, no. 2, p. 1973-1983, December 2015 [IF 2015: 5.008 (Q1, 36/213)]
- Joana Branco, Ana P. Silva, Raquel Silva, Ana Silva-Dias, Cidália Pina-Vaz, Geraldine Bitler, Acacio G. Rodrigues, Isabel Miranda. Fluconazole and Voriconazole Resistance in Candida parapsilosis Is Conferred by Gain-of-Function Mutations in MRR1 Transcription Factor Gene. Antimicrobial Agents and Chemotherapy, vol. 59, no. 10, p. 6629-33, August 2015 [IF 2015: 4.415 (Q1, 34/255)]
- Diogo Pratas, Raquel Silva, Armando J. Pinho, Paulo J S G Ferreira. An alignment-free method to find and visualise rearrangements between pairs of DNA sequences. Scientific Reports, vol. 5, p. 10203, May 2015 [IF 2015: 5.228 (Q1, 7/63)]
- Raquel Silva, Diogo Pratas, Luísa Castro, Armando J. Pinho, Paulo J S G Ferreira. Three minimal sequences found in Ebola virus genomes and absent from human DNA. Bioinformatics, vol. 31, no. 15, p. 2421-2425, April 2015 [IF 2015: 5.766 (Q1, 3/56)]
- Sara Duarte Pereira, Sarah S. Silva, Luísa Azevedo, Luísa Castro, António Amorim, Raquel Silva. Nampt and Naprt1: Novel Polymorphisms and Distribution of Variants between Normal Tissues and Tumor Samples. Scientific Reports, vol. 4, p. 6311, September 2014 [IF 2014: 5.578 (Q1, 5/57)] [IF 2015: 5.228 (Q1, 7/63)]
Other articles in journals
- Ana Marote, Nathalie Barroca, Rui Vitorino, Raquel Silva, Maria H.V. Fernandes, Paula M. Vilarinho, Odete A.B. da Cruz e Silva, Sandra I. Vieira. A proteomic analysis of the interactions between poly(L-Lactic Acid) nanofibers and SH-SY5Y neuronal-like cells. AIMS Molecular Science, vol. 3, no. 4, p. 661-682, November 2016
Articles in conference proceedings
- Vera Afreixo, João M. O. S. Rodrigues, Carlos A C Bastos, Raquel Silva. Exceptional symmetry profile: a genomic word analysis. International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB), Sevilla, Spain, vol. 477 (in Springer series Advances in Intelligent Systems and Computing), p. 151--159, June 2016
- Vera Afreixo, Carlos A C Bastos, João M. O. S. Rodrigues, Raquel Silva. Identification of DNA CpG Islands Using Inter-dinucleotide Distances. Optimization in the Natural Sciences. 30th Euro Mini-Conference, EmC-ONS 2014. Aveiro, Portugal, February 5–9, 2014. Revised Selected Papers. (Series: Communications in Computer and Information Science), Springer International Publishing, Switzerland, vol. 499, p. 162-172, 2015
- Diogo Pratas, Raquel Silva, Armando J. Pinho, Paulo J S G Ferreira. Detection and visualisation of regions of human DNA not present in other primates. Proceedings of the 21st Portuguese Conference on Pattern Recognition, RecPad 2015, Faro, Portugal, October 2015
- Sérgio Matos, David Campos, Renato Pinho, Raquel Silva, Matthew Mort, David N. Cooper, José Luís Oliveira. Assisted Mining and Curation of Genomic Variants using Egas. Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, Sevilla, Spain, p. 396-402, September 2015
- Diogo Pratas, Raquel Silva, Armando J. Pinho. Large-scale inversions between human reference assemblies. Proceedings of the 20th Portuguese Conference on Pattern Recognition, RecPad 2014, Covilhã, Portugal, October 2014
- Raquel Silva, Luísa Castro, Diogo Pratas, Armando J. Pinho. Towards personalized medicine: ebola virus absent words in the human genome. Proceedings of the 20th Portuguese Conference on Pattern Recognition, RecPad 2014, Covilhã, Portugal, October 2014
- Luísa Castro, José Luís Oliveira, Raquel Silva. Mutation Analysis in Park2 Gene Uncovers Patterns of Associated Genetic Variants. Advances in Intelligent Systems and Computing, Proc. of the 8th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics (PACBB14), Salamanca, Spain, June 2014