Rui Antunes
From IEETA
Subject | Natural language processing and deep learning for biomedical knowledge extraction | |
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Advisor | Sérgio Matos | |
Group | Biomedical Informatics and Technologies | |
Status | PhD student | |
Starts | 2015/10/19 | |
Ends | 2019/12/30 | |
Country | Portugal | |
Projects | SOCA - Smart Open Campus | |
Past projects | IF/01694/2013/CP1162/CT0018 | |
Events | HEALTHINF2019, INForum 2017, PACBB'2017, RecPad2016 | |
Proposals | ||
Personal page | https://ruiantunes.github.io |
ORCID: 0000-0003-3533-8872
Contents |
Publications
Articles in international journals listed in the ISI
- Rui Antunes, Sérgio Matos. Extraction of chemical–protein interactions from the literature using neural networks and narrow instance representation. Database, vol. 2019, no. baz095, October 2019
- Rezarta Islamaj Doğan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altınel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu. Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database, vol. 2019, no. bay147, January 2019
- Sérgio Matos, Rui Antunes. Protein-protein interaction article classification using a convolutional recurrent neural network with pre-trained word embeddings. Journal of Integrative Bioinformatics, vol. 14, no. 4, December 2017
- Rui Antunes, Sérgio Matos. Supervised learning and knowledge-based approaches applied to biomedical word sense disambiguation. Journal of Integrative Bioinformatics, vol. 14, no. 4, December 2017
Articles in conference proceedings
- Rui Antunes, João Figueira Silva, Arnaldo Pereira, Sérgio Matos. Rule-based and machine learning hybrid system for patient cohort selection. Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 5: HEALTHINF, Prague, Czech Republic, p. 59-67, February 2019
- Rui Antunes, Sérgio Matos. Evaluation of word embedding vector averaging functions for biomedical word sense disambiguation. INForum 2017 - Atas do Nono Simpósio de Informática, Aveiro, p. 25-30, October 2017
- Sérgio Matos, Rui Antunes. Identifying relevant literature for precision medicine using deep neural networks. Proceedings of the BioCreative VI Challenge Evaluation Workshop, Bethesda, MA, USA, p. 99-101, October 2017
- Rui Antunes, Sérgio Matos. Biomedical word sense disambiguation with word embeddings. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, p. 273-279, June 2017
- Rui Antunes, Sérgio Matos. Machine learning with word embeddings applied to biomedical concept disambiguation. Proceedings of the 22nd Portuguese Conference on Pattern Recognition, RecPad 2016, Aveiro, p. 77-78, October 2016
Masters thesis
- Rui Antunes. Genomics music. Masters Thesis, University of Aveiro, July 2015