Sérgio Matos
From IEETA
| Group | Information Systems and Telematics Laboratory |  |
|---|---|---|
| Transverse activity | Transverse Activity on Innovative Biomedical Technologies | |
| Status | Integrated member | |
| Country | Portugal | |
| Students | David Campos, Paulo Gaspar | |
| Projects | EU-ADR, QueryTermExp, World Search | |
| Past projects | ||
| Events | ||
| Proposals | ||
| Personal page | http://bioinformatics.ua.pt/?p=570 | |
Contents |
Publications
Articles in international journals listed in the ISI
- David Campos, Sérgio Matos, Ian Lewin, José Luís Oliveira, Dietrich Rebholz-Schuhmann. Harmonisation of gene/protein annotations: towards a gold standard MEDLINE. Bioinformatics, vol. Online first, March 2012 (IF 2010: 4.877)
- Z. Lu, H.-Y. Kao, C.-H. Wei, M. Huang, J. Liu, C.-J. Kuo, C.-N. Hsu, R.T.-H. Tsai, H.-J. Dai, N. Okazaki, H.-C. Cho, M. Gerner, I. Solt, S. Agarwal, F. Liu, D. Vishnyakova, P. Ruch, M. Romacker, F. Rinaldi, S. Bhattacharya, P. Srinivasan, H. Liu, M. Torii, Sérgio Matos, David Campos, K. Verspoor, K.M. Livingston, W.J. Wilbur. The Gene Normalization Task in BioCreative III. BMC Bioinformatics, vol. 12, no. Suppl 8, p. S2, September 2011 (IF 2010: 3.028)
- M. Krallinger, M. Vazquez, F. Leitner, D. Salgado, A. Chatraryamontri, A. Winter, L. Perfetto, L. Briganti, L. Licata, M. Iannuccelli, L. Castagnoli, G. Cesareni, M. Tyers, G. Schneider, F. Rinaldi, R. Leaman, G. Gonzalez, Sérgio Matos, S. Kim, W.J. Wilbur, L. Rocha, A.V. Tendulkar, A. Rangrej, V. Raut, S. Agarwal, F. Liu, X. Wang, R. Rak, K. Noto, C. Elkan, Z. Lu, R. I. Dogan, Jean-F. Fontaine, M.A. Andrade-Navarro, A. Valencia. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, vol. 12, no. Suppl 8, p. S3, September 2011 (IF 2010: 3.028)
- Nadia Yousaf, William Monteiro, Debbie Parker, Sérgio Matos, Surinder Birring, Ian D Pavord. Long-term low-dose erythromycin in patients with unexplained chronic cough: a double-blind placebo controlled trial. Thorax, vol. 65, no. 12, p. 1107-1110, December 2010 (IF 2010: 6.525)
- Sérgio Matos, Joel Arrais, João Maia-Rodrigues, José Luís Oliveira. Concept-based query expansion for retrieving gene related publications from MEDLINE. BMC Bioinformatics, vol. 11, no. 212, April 2010 (IF 2010: 3.028)
Other articles in journals
- Sérgio Matos, José Luís Oliveira. Classification methods for finding articles describing protein-protein interactions in PubMed. Journal of Integrative Bioinformatics, vol. 8, no. 3, p. 178, September 2011
Chapters in books
- Joel Arrais, Sérgio Matos, José Luís Oliveira. Expansão de termos de pesquisa usando redes de conceitos associadas a genes. Nuevas Fronteras Tecnológicas, Alejandre Pazos (Ed.), CYTED, 2010
Articles in proceedings of international conferences
- Sérgio Matos, José Luís Oliveira. Prioritizing Literature Search Results Using a Training Set of Classified Documents. Proc. of the 5th Int. Conf. on Practical Applications of Computational Biology and Bioinformatics, PACBB 2011, April 2011
- David Campos, D. Rebholz-Schuhman, Sérgio Matos, José Luís Oliveira. A CRF-based approach to harmonize heterogeneous gene/protein annotations. Proceedings of the Second CALBC workshop, p. 17-18, March 2011
- David Campos, Sérgio Matos, José Luís Oliveira. Annotating the CALBC corpus with a machine learning harmonization approach. Proceedings of the Second CALBC workshop, p. 43-45, March 2011
- David Campos, Sérgio Matos, José Luís Oliveira. Recognition of Gene/Protein names using Conditional Random Fields. Proceedings of the International Conference on Knowledge Discovery and Information Retrieval 2010 (KDIR2010), Valencia, Spain, October 2010
- Sérgio Matos, David Campos, José Luís Oliveira. Vector-space models and terminologies in gene normalization and document classification. Proceedings of BioCreative III Workshop, Bethesda, Maryland, USA, p. 119-124, September 2010
- Sérgio Matos, Joel Arrais, José Luís Oliveira. Expanding Gene-based PubMed Queries. Proceedings of the 4th International Workshop on Practical Applications of Computational Biology and Bioinformatics 2010 (IWPACBB 2010), Guimarães, Portugal, vol. 74, p. 61-68, June 2010
- Joel Arrais, João Pereira, Pedro Lopes, Sérgio Matos, José Luís Oliveira. Improving cross mapping in biomedical databases. 4th International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2010), June 2010
- Sérgio Matos, Anabela Barreiro, José Luís Oliveira. Syntactic Parsing for Bio-molecular Event Detection from Scientific Literature. 14th Portuguese Conference on Artificial Intelligence, Aveiro, Portugal, vol. 5816, p. 79-85, October 2009