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• Jorge Miguel Silva, Diogo Pratas, Tânia Caetano, Sérgio Matos. The complexity landscape of viral genomes. GigaScience, vol. 11, August 2022 [IF 2018: 4.688 (Q1, 13/69)]
• Weihong Qi, Yi-Wen Lim, Andrea Patrignani, Pascal Schläpfer, Anna Bratus-Neuenschwander, Simon Grüter, Christelle Chanez, Nathalie Rodde, Elisa Prat, Sonia Vautrin, Margaux-Alison Fustier, Diogo Pratas, Ralph Schlapbach, Wilhelm Gruissem. The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features. GigaScience, vol. 11, March 2022 [IF 2018: 4.688 (Q1, 13/69)]
• Outi I. Mielonen, Diogo Pratas, Klaus Hedman, Antti Sajantila, Maria F. Perdomo. Detection of Low-Copy Human Virus DNA upon Prolonged Formalin Fixation. Viruses, vol. 14, no. 1, p. 133, January 2022 [IF 2018: 3.811]
• João Monteiro, Diogo Pratas, Arnaldo Videira, Filipe Pereira. Revisiting the Neurospora crassa mitochondrial genome. Letters in Applied Microbiology, August 2021 [IF 2018: 2.858]
• Milton Silva, Diogo Pratas, Armando J. Pinho. AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models. Entropy, vol. 23, no. 5, p. 530, April 2021 [IF 2018: 2.419 (Q2, 28/81)]
• Mari Toppinen, Antti Sajantila, Diogo Pratas, Klaus Hedman, Maria F. Perdomo. The Human Bone Marrow Is Host to the DNAs of Several Viruses. Frontiers in Cellular and Infection Microbiology, vol. 11, p. 329, April 2021 [IF 2018: 3.584 (Q1)]
• Jorge Miguel Silva, Diogo Pratas, Rui Antunes, Sérgio Matos, Armando J. Pinho. Automatic analysis of artistic paintings using information-based measures. Pattern Recognition, p. 107864, February 2021 [IF 2018: 5.165 (Q1, 10/202)]
• João Almeida, Diogo Pratas, José Luís Oliveira. A semi-automatic methodology for analysing distributed and private biobanks. Computers in Biology and Medicine, vol. 130, p. 104180, January 2021 [IF 2018: 2.895]
• Milton Silva, Diogo Pratas, Armando J. Pinho. Efficient DNA sequence compression with neural networks. GigaScience, vol. 9, no. 11, p. giaa119, November 2020 [IF 2020: 6.520 (Q1, 10/71)] [IF 2018: 4.688 (Q1, 13/69)]
• Mari Toppinen, Diogo Pratas, Elina Väisänen, Maria Söderlund-Venermo, Klaus Hedman, Maria F. Perdomo, Antti Sajantila. The landscape of persistent human DNA viruses in femoral bone. Forensic Science International: Genetics, vol. 48, p. 102353, September 2020 [IF 2018: 4.884 (Q1, 1/17)]
• Diogo Pratas, Mari Toppinen, Lari Pyöriä, Klaus Hedman, Antti Sajantila, Maria F. Perdomo. A hybrid pipeline for reconstruction and analysis of viral genomes at multi-organ level. GigaScience, vol. 9, no. 8, p. 11, August 2020 [IF 2020: 6.520 (Q1, 10/71)] [IF 2018: 4.688 (Q1, 13/69)]
• Diogo Pratas, Jorge Miguel Silva. Persistent minimal sequences of SARS-CoV-2. Bioinformatics, vol. btaa686, p. 4, August 2020 [IF 2018: 4.531 (Q1, 4/59)]
• João Almeida, Armando J. Pinho, José Luís Oliveira, Olga Fajarda, Diogo Pratas. GTO: A toolkit to unify pipelines in genomic and proteomic research. SoftwareX, vol. 12, p. 100535, July 2020
• Morteza Hosseini, Diogo Pratas, Burkhard Morgenstern, Armando J. Pinho. Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements. GigaScience, vol. 9, no. 5, May 2020 [IF 2020: 6.520 (Q1, 10/71)] [IF 2018: 4.688 (Q1, 13/69)]
• Jorge Miguel Silva, Eduardo Pinho, Sérgio Matos, Diogo Pratas. Statistical Complexity Analysis of Turing Machine Tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model. Entropy, vol. 22, no. 1, January 2020 [IF 2018: 2.419 (Q2, 28/81)]
• Diogo Pratas, Morteza Hosseini, Jorge Miguel Silva, Armando J. Pinho. A reference-free lossless compression algorithm for DNA sequences using a competitive prediction of two classes of weighted models. Entropy, vol. 21, p. 1074, November 2019 [IF 2018: 2.419 (Q2, 28/81)]
• Morteza Hosseini, Diogo Pratas, Armando J. Pinho. AC: A Compression Tool for Amino Acid Sequences. Interdisciplinary Sciences: Computational Life Sciences, vol. 11, no. 1, p. 68-76, March 2019 [IF 2018: 1.418 (Q3, 40/59)]
• João M. Carvalho, Susana Brás, Diogo Pratas, Jacqueline Ferreira, Sandra C. Soares, Armando J. Pinho. Extended-Alphabet Finite-Context Models. Pattern Recognition Letters, no. 112, p. 49-55, September 2018 [IF 2018: 2.810 (Q2, 50/134)]
• Diogo Pratas, Morteza Hosseini, Gonçalo Grilo, Armando J. Pinho, Raquel Silva, Tânia Caetano, João Carneiro, Filipe Pereira. Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard. Genes, vol. 9, no. 9, p. 445, September 2018 [IF 2018: 3.331 (Q2, 61/174)]
• Morteza Hosseini, Diogo Pratas, Armando J. Pinho. Cryfa: a secure encryption tool for genomic data. Bioinformatics, p. bty645, July 2018 [IF 2018: 4.531 (Q1, 4/59)]