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• Luís Matos, Diogo Pratas, Armando J. Pinho. Compression of Whole Genome Alignments Using a Mixture of Finite-Context Models. Proceedings of 9th International Conference on Image Analysis and Recognition, ICIAR 2012, Aveiro, Portugal, vol. Aurélio Campilho and Mohamed Kamel (Eds.): Part I, LNCS 7324, p. 359-366, June 2012
• Diogo Pratas, Armando J. Pinho. On the Detection of Unknown Locally Repeating Patterns in Images. Proceedings of 9th International Conference on Image Analysis and Recognition, ICIAR 2012, Aveiro, Portugal, vol. Aurélio Campilho and Mohamed Kamel (Eds.): Part I, LNCS 7324, p. 158-165, June 2012
• Diogo Pratas, Armando J. Pinho, Sara Pinto Garcia. Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. Advances in Intelligent and Soft Computing, Proc. of the 6th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics, PACBB 2012, Salamanca, Spain, vol. 154, p. 217-224, March 2012
• Diogo Pratas, Armando J. Pinho, Sara Pinto Garcia. Computation of the normalized compression distance of DNA sequences using a mixture of finite-context models. Bioinformatics 2012: International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Portugal, February 2012
• Armando J. Pinho, Diogo Pratas, Sara Pinto Garcia. Complexity Profiles of DNA Sequences Using Finite-Context Models. Information Quality in e-Health: 7th Conference of the Workgroup Human-Computer Interaction and Usability Engineering of the Austrian Computer Society, USAB 2011, Graz, Austria, vol. LNCS 7058, p. 75-82, November 2011
• Diogo Pratas, Sara Pinto Garcia, Armando J. Pinho. Analysis of patterns in S. pombe genome through compression-based complexity profiles. Proc. of the 17th Portuguese Conf. on Pattern Recognition, RecPad 2011, Porto, Portugal, October 2011
• Luís Matos, António J. R. Neves, Armando J. Pinho. Lossy-to-lossless compression of microarray images using expectation pixel values. Proc. of the 17th Portuguese Conf. on Pattern Recognition, RecPad 2011, Porto, Portugal, October 2011
• Armando J. Pinho, Paulo J S G Ferreira. Image similarity using the normalized compression distance based on finite context models. Proc. of the IEEE Conf. on Image Processing, ICIP 2011, Brussels, Belgium, September 2011
• Armando J. Pinho, Paulo J S G Ferreira. Finding unknown repeated patterns in images. Proc. of the European Signal Processing Conference, EUSIPCO 2011, Barcelona, Spain, p. 584-588, August 2011
• Armando J. Pinho, Diogo Pratas, Paulo J S G Ferreira, Sara Pinto Garcia. Symbolic to numerical conversion of DNA sequences using finite-context models. Proc. of the European Signal Processing Conference, EUSIPCO 2011, Barcelona, Spain, p. 2024-2028, August 2011
• Paulo J S G Ferreira, Armando J. Pinho, Carlos A C Bastos. A probabilistic image analysis problem and random linear equations. Proc. of the IEEE Workshop on Statistical Signal Processing, SSP 2011, Nice, France, p. 325-328, June 2011
• Armando J. Pinho, Diogo Pratas, Paulo J S G Ferreira. Bacteria DNA sequence compression using a mixture of finite-context models. Proc. of the IEEE Workshop on Statistical Signal Processing, SSP 2011, Nice, France, p. 125-128, June 2011
• Diogo Pratas, Carlos A C Bastos, Armando J. Pinho, António J. R. Neves, Luís Matos. DNA synthetic sequences generation using multiple competing Markov models. Proc. of the IEEE Workshop on Statistical Signal Processing, SSP 2011, Nice, France, p. 133-136, June 2011
• Paulo J S G Ferreira, Bruno Jesus, José M. N. Vieira, Armando J. Pinho. Random block-angular matrices for distributed data storage. Proc. of the IEEE Int. Conf. on Acoustics, Speech, and Signal Processing, ICASSP 2011, Prague, Czech Republic, p. 3180-3183, May 2011
• Diogo Pratas, Armando J. Pinho. Compressing the human genome using exclusively Markov models. Advances in Intelligent and Soft Computing, Proc. of the 5th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, Salamanca, Spain, vol. 93, p. 213-220, April 2011
• Carlos A C Bastos, Vera Afreixo, Armando J. Pinho, Sara Pinto Garcia, João M. O. S. Rodrigues, Paulo J S G Ferreira. Distances between dinucleotides in the human genome. Advances in Intelligent and Soft Computing, Proc. of the 5th Int. Conf. on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, Salamanca, Spain, vol. 93, p. 205-211, April 2011
• Diogo Pratas, Armando J. Pinho. Analysis of DNA sequences using finite-context modelling and compression. Proc. of the 16th Portuguese Conf. on Pattern Recognition, RecPad 2010, Vila Real, Portugal, October 2010
• Diogo Pratas, Armando J. Pinho, António J. R. Neves, Carlos A C Bastos. DNA synthetic sequences generated by finite-context models. Proc. of the 16th Portuguese Conf. on Pattern Recognition, RecPad 2010, Vila Real, Portugal, October 2010
• Luís Matos, António J. R. Neves, Armando J. Pinho. Lossless compression of microarray images based on background/foreground separation. Proc. of the 16th Portuguese Conf. on Pattern Recognition, RecPad 2010, Vila Real, Portugal, October 2010
• Armando J. Pinho, Sara Pinto Garcia, Paulo J S G Ferreira, Vera Afreixo, Carlos A C Bastos, António J. R. Neves, João M. O. S. Rodrigues. Exploring homology using the concept of three-state entropy vector. Pattern Recognition in Bioinformatics, 5th IAPR International Conference, PRIB 2010, Nijmegen, The Netherlands, vol. LNBI 6282, p. 161-170, September 2010