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- Jorge Miguel Silva, Diogo Pratas, Tânia Caetano, Sérgio Matos. Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods. Proceedings of the 10th Iberian Conference on Pattern Recognition and Image Analysis, IbPRIA, Aveiro, Portugal, p. 309-320, May 2022
- Jorge Miguel Silva, Diogo Pratas, Tania Caetano, Sérgio Matos. Archaea Taxonomic Classification. Proceedings of the 27th Portuguese Conference on Pattern Recognition, RecPad 2021, Évora, Portugal, November 2021
- Jorge Miguel Silva, Diogo Pratas, Sérgio Matos. Comparison and Evaluation of Information-based Measures in Images. Proceedings of the 26th Portuguese Conference on Pattern Recognition, RecPad 2020, Évora, Portugal, October 2020
- Morteza Hosseini, Diogo Pratas, António Amorim, João Carneiro. Improving the detection of mtDNA rearrangements using a fast and accurate algorithm. XV Encontro Nacional de Biologia Evolutiva, Porto, Portugal, November 2019
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. Clustering DNA sequences by relative compression. 25th Portuguese Conference on Pattern Recognition, RecPad, Porto, Portugal, October 2019
- Jorge Miguel Silva, Diogo Pratas, Sérgio Matos. Evaluation of Statistical Complexity in Viral Genome Sequences. 25th Portuguese Conference on Pattern Recognition, RECPAD2019, Porto, Portugal, October 2019
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. A Probabilistic method to find and visualize distinct regions in protein sequences. Proceedings of the 27th European Signal Processing Conference, EUSIPCO 2019, A Coruña, Spain, September 2019
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences. Proceedings of the 13th International Conference on Practical Applications of Computational Biology & Bioinformatics, Avila, Spain, p. 137-145, June 2019
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes. Proceedings of the 13th International Conference on Practical Applications of Computational Biology & Bioinformatics, Avila, Spain, p. 129-136, June 2019
- Ana Teixeira, Diogo Pratas, Armando J. Pinho, Raquel Silva. Evolutionary insights from the comparative analysis of hominid genomes. Proceedings of the 24th Portuguese Conference on Pattern Recognition, RecPad2018, Coimbra, October 2018
- Catarina Figueiredo, Diogo Pratas, Armando J. Pinho, Raquel Silva. Identification of antifungal targets using alignment-free methods. Proceedings of the 24th Portuguese Conference on Pattern Recognition, RecPad2018, Coimbra, October 2018
- Armando J. Pinho, Diogo Pratas. An Application of Data Compression Models to Handwritten Digit Classification. International Conference on Advanced Concepts for Intelligent Vision Systems. Springer, Cham., p. 487-495, September 2018
- Diogo Pratas, Armando J. Pinho. Metagenomic composition analysis of sedimentary ancient DNA from the Isle of Wight. 26th edition of the European Signal Processing Conference, EUSIPCO 2018, Rome, Italy, September 2018
- Diogo Pratas, Armando J. Pinho. A DNA sequence corpus for compression benchmark. PACBB 2018 - 12th International Conference on Practical Applications of Computational Biology & Bioinformatics, Toledo, Spain, June 2018
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Compression of amino acid sequences. PACBB 2018 - 12th International Conference on Practical Applications of Computational Biology & Bioinformatics, Toledo, Spain, June 2018
- Manuel Gaspar, Diogo Pratas, Armando J. Pinho. NET-ASAR: a tool for DNA sequence search based on data compression. PACBB 2018 - 12th International Conference on Practical Applications of Computational Biology & Bioinformatics, Toledo, Spain, June 2018
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Cryfa: a tool to compact and encrypt FASTA files. PACBB 2017 - 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, Portugal, vol. AISC 616, p. 305-312, June 2017
- Diogo Pratas, Armando J. Pinho. On the approximation of the Kolmogorov complexity for DNA sequences. IbPRIA 2017 - 8th Iberian Conference on Pattern Recognition and Image Analysis, Faro, Portugal, vol. LNCS 10255, p. 259-266, June 2017
- Morteza Hosseini, Diogo Pratas, Armando J. Pinho. On the role of inverted repeats in DNA sequence similarity. PACBB 2017 - 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, Portugal, vol. AISC 616, p. 228-236, June 2017
- Diogo Pratas, Morteza Hosseini, Armando J. Pinho. Substitutional tolerant Markov models for relative compression of DNA sequences. PACBB 2017 - 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, Porto, Portugal, vol. AISC 616, p. 265-272, June 2017